Non-Coding RNA Search

Ss1.1-Mixn-0036f12.5

Sequence:


               
               CTAGAGAAGGGGGGGGAGGCAGTTGGGATAATGTTTGACATCAGAGTTGGAGGCTGTGGG
CAAGCAAATGCACTTGGCCTCTGGGTCGTGGGACTCAAGAAAGTGACTCATCCTCTTGAA
GATGGTGAAACAGGAGAGAGAGAGACTGCTGCTTGTAGGGGCAGGGCCCACTTTATCCCG
GTTCTTTGTCCTTTTCCTTGTTGCATAACCCCTGCCCACCCAGGTCTGTGAGCCCCTGCA
GCTGCCACCACCTGACTCTAGCACATACTACAGGAGAAGCCTTTGCTACACGGCTGACCC
TCTGCTCCCCACAGTGACCACTGCCCTTCCCTAAGCCAAGGCCCCTCTAGTCCCCTGTTA
GTTAAATACGAAATGTCCCCCCTGTGTTTTAGGTAGCATCCTATTTTATAGCTTGAGAAA
CCAAGACCCAGGCAGAGTGAAGACACTGGTTTGTATTCCTGCAGCCTGGAGGCAGGCCAG
CTTGGGGCAGACACTTTGACCCAGAGCACCTGTTCTGCTGTCTGCGGGAAGACTGACGGG
CCCGAGATGACCGGTGCCCACAAGTGGGGCTAAGAGGGCCCACTCCAGGCTACCCCTGTC
CCCTCTAAGGCCAGAAAGAGGGAGAAGTAGGAGCCCCTCCCTCTTTCCAAGACTGGGTGC
CCTCCTGCACTCCCTCCTGCCACCCACTCTGCTAACCTCAGGGCACCCTGCTGCCTTTAG
TCACTGACGTAAATAAAGACAACTGCTGTGGCCTTCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGAGAAGGGGGGGGAGGCAGTTGGGATAATGTTTGACATCAGAGTTGGAGGCTGTGGG
CAAGCAAATGCACTTGGCCTCTGGGTCGTGGGACTCAAGAAAGTGACTCATCCTCTTGAA
GATGGTGAAACAGGAGAGAGAGAGACTGCTGCTTGTAGGGGCAGGGCCCACTTTATCCCG
GTTCTTTGTCCTTTTCCTTGTTGCATAACCCCTGCCCACCCAGGTCTGTGAGCCCCTGCA
GCTGCCACCACCTGACTCTAGCACATACTACAGGAGAAGCCTTTGCTACACGGCTGACCC
TCTGCTCCCCACAGTGACCACTGCCCTTCCCTAAGCCAAGGCCCCTCTAGTCCCCTGTTA
GTTAAATACGAAATGTCCCCCCTGTGTTTTAGGTAGCATCCTATTTTATAGCTTGAGAAA
CCAAGACCCAGGCAGAGTGAAGACACTGGTTTGTATTCCTGCAGCCTGGAGGCAGGCCAG
CTTGGGGCAGACACTTTGACCCAGAGCACCTGTTCTGCTGTCTGCGGGAAGACTGACGGG
CCCGAGATGACCGGTGCCCACAAGTGGGGCTAAGAGGGCCCACTCCAGGCTACCCCTGTC
CCCTCTAAGGCCAGAAAGAGGGAGAAGTAGGAGCCCCTCCCTCTTTCCAAGACTGGGTGC
CCTCCTGCACTCCCTCCTGCCACCCACTCTGCTAACCTCAGGGCACCCTGCTGCCTTTAG
TCACTGACGTAAATAAAGACAACTGCTGTGGCCTTCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               101-203, - strand, RNAz p=0.566957

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-203, - strand, RNAz p=0.566957

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK124465, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK124465, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-601, gnl|bosTau2|chr19 (37402508-37403105)
               

               
               2-601, gnl|canFam2|chr9 (21895531-21894861)
               

               
               2-601, gnl|dasNov1|scaffold_12584 (38589-37903)
               

               
               2-601, gnl|echTel1|scaffold_313504 (48046-48610)
               

               
               2-601, gnl|hg17|chr17 (40338421-40339130)
               

               
               2-601, gnl|Hg17|chr17 (40339271-40338683)
               

               
               2-601, gnl|loxAfr1|scaffold_5449 (7249-7960)
               

               
               2-601, gnl|mm7|chr11 (102996224-102996894)
               

               
               2-601, gnl|Mm7|chr11 (102997033-102996492)
               

               
               2-601, gnl|oryCun1|scaffold_201489 (35428-34789)
               

               
               2-601, gnl|panTro1|chr19 (43614060-43614769)
               

               
               2-601, gnl|rheMac2|chr16 (54999293-54999999)
               

               
               2-601, gnl|rn3|chr10 (92074159-92074752)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-601, gnl|bosTau2|chr19 (37402508-37403105)
               

               
               2-601, gnl|canFam2|chr9 (21895531-21894861)
               

               
               2-601, gnl|dasNov1|scaffold_12584 (38589-37903)
               

               
               2-601, gnl|echTel1|scaffold_313504 (48046-48610)
               

               
               2-601, gnl|hg17|chr17 (40338421-40339130)
               

               
               2-601, gnl|Hg17|chr17 (40339271-40338683)
               

               
               2-601, gnl|loxAfr1|scaffold_5449 (7249-7960)
               

               
               2-601, gnl|mm7|chr11 (102996224-102996894)
               

               
               2-601, gnl|Mm7|chr11 (102997033-102996492)
               

               
               2-601, gnl|oryCun1|scaffold_201489 (35428-34789)
               

               
               2-601, gnl|panTro1|chr19 (43614060-43614769)
               

               
               2-601, gnl|rheMac2|chr16 (54999293-54999999)
               

               
               2-601, gnl|rn3|chr10 (92074159-92074752)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               hyp (8.99871)
               

               
               fbs (6.13712)
               

               
               fhi (2.03493)
               

               
               cbr (1.27975)
               

               
               fce (1.08637)
               

               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (8.99871)
               

               
               fbs (6.13712)
               

               
               fhi (2.03493)
               

               
               cbr (1.27975)
               

               
               fce (1.08637)
               

               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               ebs (0.118301)

	2-601, gnl\|bosTau2\|chr19 (37402508-37403105)
	2-601, gnl\|canFam2\|chr9 (21895531-21894861)
	2-601, gnl\|dasNov1\|scaffold_12584 (38589-37903)
	2-601, gnl\|echTel1\|scaffold_313504 (48046-48610)
	2-601, gnl\|hg17\|chr17 (40338421-40339130)
	2-601, gnl\|Hg17\|chr17 (40339271-40338683)
	2-601, gnl\|loxAfr1\|scaffold_5449 (7249-7960)
	2-601, gnl\|mm7\|chr11 (102996224-102996894)
	2-601, gnl\|Mm7\|chr11 (102997033-102996492)
	2-601, gnl\|oryCun1\|scaffold_201489 (35428-34789)
	2-601, gnl\|panTro1\|chr19 (43614060-43614769)
	2-601, gnl\|rheMac2\|chr16 (54999293-54999999)
	2-601, gnl\|rn3\|chr10 (92074159-92074752)

	hyp (8.99871)
	fbs (6.13712)
	fhi (2.03493)
	cbr (1.27975)
	fce (1.08637)
	fcc (0.39557)
	ece (0.229305)
	ebs (0.118301)