Ss1.1-Mixn-0036g11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTTGAGCCAGAAGGCCCGGAACTTGCAGGCCCAGTATGACCGTCGGAGAGGCATGGA CATCAAGCAGATGAAGAACTTCGTGTCCCAGGAGCTCAAGGGACTGAAACAGGAGCACCG GCTGCTGAGTCTCCATATGGGGGCCTGTGAATCCATCATGAAGAAGAAAACCAAGCAAGA CTTCCAGGAGCTCATCAAGACTGAGCATGCACTGCTAGAGGGCTTCAACATCCGGGAGAG CACCAGCTACATCGAAGAGCACATAGATCGGCAGGTGTCACCCATTGAAAGCCTTCGCCT CATGTGCCTTTTGTCCATCACTGAGAATGGTTTGATCCCAAAAGATTACCGATCCCTGAA AACCCAGTATCTGCAGAGCTATGGCCCTGAGCACCTGCTAACCTTCTCCAATCTGCGGCG AGCTGGGCTCCTAACAGAGCAGGCACCGGGGGACACCCTCACAGCTGTAGAGAGTAAAGT GAGCAAGCTGGTGACGGACAAGGCTGCAGGAAAGATTACTGATGCCTTCAGTTCTTTGGC CAAGAGGAGCAATTTTCGTGCCATCAGCAAGAAGCTGAATTTGATCCCACGTGTGGACGG CGAGTATGATCTGAAAGTGCCACGCGACATGGCCTACGTGTTCAGTGGTGCTTATGTGCC CCTGAGCTGCCGAATCATCGAGCAGGTGCTGGAGCGGCGAGGCTGGCAGGGCCTGGACGA AGTGGTGCGGCTGCTCAACTGCAGTGAGTTGGTGTTCACAGACAGGAGCAAGGAAGACAA GGCTTCCAGTGAGTCCCTGCGCCTCATCTTGGTGGTGTTCTTGGGTGGTTGCACATTCTC TGAGATCTCAGCCCTGCGGTTCCTGGGTAGAGAGAAAGGGTACAGATTCATTTTTCTGAC GACTGCAGTCACCAACAGTGCTCGCCTTATGGAGGCCATGAGTGAAGTGAAAGCCTGAAG TTTTCCCTGCCACAATTGAAGTCTCATGTTCCTCAGTGGGATGCAGGCATTTGACTCCCG GCGGCAAATAAAATCTCTACTAATGCCCCTCCTAAGAGCTAAGGAGCAGGGAACTTTTTT GGGACTTAGAGAACATATCTGAGGAGAGAGTTCACATCCTACCCCCAGGATATTTCTTTT TCGTTTAAGGAGTCCAGCCGATGCTGACAAAATAAGGTAGAAAAAGATCTTTTGCTAAAT CCTCTTTTAGGATCATTGTAAATAAAATCTTTACTCTTAGTGTCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTTGAGCCAGAAGGCCCGGAACTTGCAGGCCCAGTATGACCGTCGGAGAGGCATGGA CATCAAGCAGATGAAGAACTTCGTGTCCCAGGAGCTCAAGGGACTGAAACAGGAGCACCG GCTGCTGAGTCTCCATATGGGGGCCTGTGAATCCATCATGAAGAAGAAAACCAAGCAAGA CTTCCAGGAGCTCATCAAGACTGAGCATGCACTGCTAGAGGGCTTCAACATCCGGGAGAG CACCAGCTACATCGAAGAGCACATAGATCGGCAGGTGTCACCCATTGAAAGCCTTCGCCT CATGTGCCTTTTGTCCATCACTGAGAATGGTTTGATCCCAAAAGATTACCGATCCCTGAA AACCCAGTATCTGCAGAGCTATGGCCCTGAGCACCTGCTAACCTTCTCCAATCTGCGGCG AGCTGGGCTCCTAACAGAGCAGGCACCGGGGGACACCCTCACAGCTGTAGAGAGTAAAGT GAGCAAGCTGGTGACGGACAAGGCTGCAGGAAAGATTACTGATGCCTTCAGTTCTTTGGC CAAGAGGAGCAATTTTCGTGCCATCAGCAAGAAGCTGAATTTGATCCCACGTGTGGACGG CGAGTATGATCTGAAAGTGCCACGCGACATGGCCTACGTGTTCAGTGGTGCTTATGTGCC CCTGAGCTGCCGAATCATCGAGCAGGTGCTGGAGCGGCGAGGCTGGCAGGGCCTGGACGA AGTGGTGCGGCTGCTCAACTGCAGTGAGTTGGTGTTCACAGACAGGAGCAAGGAAGACAA GGCTTCCAGTGAGTCCCTGCGCCTCATCTTGGTGGTGTTCTTGGGTGGTTGCACATTCTC TGAGATCTCAGCCCTGCGGTTCCTGGGTAGAGAGAAAGGGTACAGATTCATTTTTCTGAC GACTGCAGTCACCAACAGTGCTCGCCTTATGGAGGCCATGAGTGAAGTGAAAGCCTGAAG TTTTCCCTGCCACAATTGAAGTCTCATGTTCCTCAGTGGGATGCAGGCATTTGACTCCCG GCGGCAAATAAAATCTCTACTAATGCCCCTCCTAAGAGCTAAGGAGCAGGGAACTTTTTT GGGACTTAGAGAACATATCTGAGGAGAGAGTTCACATCCTACCCCCAGGATATTTCTTTT TCGTTTAAGGAGTCCAGCCGATGCTGACAAAATAAGGTAGAAAAAGATCTTTTGCTAAAT CCTCTTTTAGGATCATTGTAAATAAAATCTTTACTCTTAGTGTCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1029-1139, - strand, RNAz p=0.595034 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1029-1139, - strand, RNAz p=0.595034 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 365-510, gnl|bosTau2|chr21 (12066882-12067027) | |
| 365-510, gnl|canFam2|chr3 (56098155-56097994) | |
| 365-510, gnl|danRer3|chr11 (29507552-29507392) | |
| 365-510, gnl|dasNov1|scaffold_17211 (36240-36079) | |
| 365-510, gnl|echTel1|scaffold_311655 (1315-1471) | |
| 365-510, gnl|fr1|chrUn (232740036-232740188) | |
| 365-510, gnl|galGal2|chrUn (112799703-112799557) | |
| 365-510, gnl|hg17|chr15 (89346265-89346426) | |
| 365-510, gnl|Hg17|chr15 (89346428-89346283) | |
| 365-510, gnl|mm7|chr7 (76156746-76156599) | |
| 365-510, gnl|Mm7|chr7 (76156595-76156740) | |
| 365-510, gnl|monDom2|scaffold_45 (10105882-10106043) | |
| 365-510, gnl|oryCun1|scaffold_204575 (1806-1645) | |
| 365-510, gnl|panTro1|chr16 (90298100-90298261) | |
| 365-510, gnl|rheMac2|chr7 (70755359-70755520) | |
| 365-510, gnl|rn3|chr1 (136184483-136184336) | |
| 365-510, gnl|tetNig1|chrUn_random (6848139-6847984) | |
| 365-510, gnl|xenTro1|scaffold_358 (40392-40231) | |
| 583-688, gnl|bosTau2|chr21 (12068377-12068482) | |
| 583-688, gnl|canFam2|chr3 (56099467-56099339) | |
| 583-688, gnl|canFam2|chr3 (56099618-56099313) | |
| 583-688, gnl|canFam2|chr3 (56099500-56099266) | |
| 583-688, gnl|danRer3|chr11 (29510160-29510023) | |
| 583-688, gnl|echTel1|scaffold_320294 (39803-39666) | |
| 583-688, gnl|echTel1|scaffold_320294 (39959-39641) | |
| 583-688, gnl|echTel1|scaffold_320294 (39839-39591) | |
| 583-688, gnl|fr1|chrUn (232739654-232739765) | |
| 583-688, gnl|galGal2|chrUn (112800314-112800204) | |
| 583-688, gnl|hg17|chr15 (89344695-89344830) | |
| 583-688, gnl|Hg17|chr15 (89344826-89344721) | |
| 583-688, gnl|hg17|chr4 (3021032-3021347) | |
| 583-688, gnl|hg17|chr9 (112424259-112424503) | |
| 583-688, gnl|loxAfr1|scaffold_154408 (916-781) | |
| 583-688, gnl|loxAfr1|scaffold_154408 (1086-755) | |
| 583-688, gnl|loxAfr1|scaffold_154408 (948-704) | |
| 583-688, gnl|mm7|chr7 (76158943-76158808) | |
| 583-688, gnl|mm7|chr7 (76159101-76158783) | |
| 583-688, gnl|mm7|chr7 (76158981-76158736) | |
| 583-688, gnl|Mm7|chr7 (76158810-76158915) | |
| 583-688, gnl|monDom2|scaffold_45 (10103054-10103189) | |
| 583-688, gnl|monDom2|scaffold_45 (10102905-10103217) | |
| 583-688, gnl|monDom2|scaffold_45 (10103023-10103257) | |
| 583-688, gnl|oryCun1|scaffold_181677 (519-652) | |
| 583-688, gnl|oryCun1|scaffold_181677 (363-672) | |
| 583-688, gnl|oryCun1|scaffold_181677 (487-719) | |
| 583-688, gnl|panTro1|chr11 (96949032-96949276) | |
| 583-688, gnl|panTro1|chr16 (90296531-90296666) | |
| 583-688, gnl|panTro1|chr3 (3071264-3071579) | |
| 583-688, gnl|rheMac2|chr1 (959299-958984) | |
| 583-688, gnl|rheMac2|chr15 (23535735-23535491) | |
| 583-688, gnl|rheMac2|chr7 (70753352-70753487) | |
| 583-688, gnl|rn3|chr1 (136186729-136186594) | |
| 583-688, gnl|rn3|chr1 (136186849-136186569) | |
| 583-688, gnl|rn3|chr1 (136186762-136186521) | |
| 583-688, gnl|tetNig1|chrUn_random (6848492-6848381) | |
| 583-688, gnl|xenTro1|scaffold_358 (41406-41286) | |
| 877-1237, gnl|bosTau2|chr21 (12069232-12069589) | |
| 877-1237, gnl|Hg17|chr15 (89343290-89342916) | |
| 877-1237, gnl|Mm7|chr7 (76159942-76160399) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 365-510, gnl|bosTau2|chr21 (12066882-12067027) | |
| 365-510, gnl|canFam2|chr3 (56098155-56097994) | |
| 365-510, gnl|danRer3|chr11 (29507552-29507392) | |
| 365-510, gnl|dasNov1|scaffold_17211 (36240-36079) | |
| 365-510, gnl|echTel1|scaffold_311655 (1315-1471) | |
| 365-510, gnl|fr1|chrUn (232740036-232740188) | |
| 365-510, gnl|galGal2|chrUn (112799703-112799557) | |
| 365-510, gnl|hg17|chr15 (89346265-89346426) | |
| 365-510, gnl|Hg17|chr15 (89346428-89346283) | |
| 365-510, gnl|mm7|chr7 (76156746-76156599) | |
| 365-510, gnl|Mm7|chr7 (76156595-76156740) | |
| 365-510, gnl|monDom2|scaffold_45 (10105882-10106043) | |
| 365-510, gnl|oryCun1|scaffold_204575 (1806-1645) | |
| 365-510, gnl|panTro1|chr16 (90298100-90298261) | |
| 365-510, gnl|rheMac2|chr7 (70755359-70755520) | |
| 365-510, gnl|rn3|chr1 (136184483-136184336) | |
| 365-510, gnl|tetNig1|chrUn_random (6848139-6847984) | |
| 365-510, gnl|xenTro1|scaffold_358 (40392-40231) | |
| 583-688, gnl|bosTau2|chr21 (12068377-12068482) | |
| 583-688, gnl|canFam2|chr3 (56099467-56099339) | |
| 583-688, gnl|canFam2|chr3 (56099618-56099313) | |
| 583-688, gnl|canFam2|chr3 (56099500-56099266) | |
| 583-688, gnl|danRer3|chr11 (29510160-29510023) | |
| 583-688, gnl|echTel1|scaffold_320294 (39803-39666) | |
| 583-688, gnl|echTel1|scaffold_320294 (39959-39641) | |
| 583-688, gnl|echTel1|scaffold_320294 (39839-39591) | |
| 583-688, gnl|fr1|chrUn (232739654-232739765) | |
| 583-688, gnl|galGal2|chrUn (112800314-112800204) | |
| 583-688, gnl|hg17|chr15 (89344695-89344830) | |
| 583-688, gnl|Hg17|chr15 (89344826-89344721) | |
| 583-688, gnl|hg17|chr4 (3021032-3021347) | |
| 583-688, gnl|hg17|chr9 (112424259-112424503) | |
| 583-688, gnl|loxAfr1|scaffold_154408 (916-781) | |
| 583-688, gnl|loxAfr1|scaffold_154408 (1086-755) | |
| 583-688, gnl|loxAfr1|scaffold_154408 (948-704) | |
| 583-688, gnl|mm7|chr7 (76158943-76158808) | |
| 583-688, gnl|mm7|chr7 (76159101-76158783) | |
| 583-688, gnl|mm7|chr7 (76158981-76158736) | |
| 583-688, gnl|Mm7|chr7 (76158810-76158915) | |
| 583-688, gnl|monDom2|scaffold_45 (10103054-10103189) | |
| 583-688, gnl|monDom2|scaffold_45 (10102905-10103217) | |
| 583-688, gnl|monDom2|scaffold_45 (10103023-10103257) | |
| 583-688, gnl|oryCun1|scaffold_181677 (519-652) | |
| 583-688, gnl|oryCun1|scaffold_181677 (363-672) | |
| 583-688, gnl|oryCun1|scaffold_181677 (487-719) | |
| 583-688, gnl|panTro1|chr11 (96949032-96949276) | |
| 583-688, gnl|panTro1|chr16 (90296531-90296666) | |
| 583-688, gnl|panTro1|chr3 (3071264-3071579) | |
| 583-688, gnl|rheMac2|chr1 (959299-958984) | |
| 583-688, gnl|rheMac2|chr15 (23535735-23535491) | |
| 583-688, gnl|rheMac2|chr7 (70753352-70753487) | |
| 583-688, gnl|rn3|chr1 (136186729-136186594) | |
| 583-688, gnl|rn3|chr1 (136186849-136186569) | |
| 583-688, gnl|rn3|chr1 (136186762-136186521) | |
| 583-688, gnl|tetNig1|chrUn_random (6848492-6848381) | |
| 583-688, gnl|xenTro1|scaffold_358 (41406-41286) | |
| 877-1237, gnl|bosTau2|chr21 (12069232-12069589) | |
| 877-1237, gnl|Hg17|chr15 (89343290-89342916) | |
| 877-1237, gnl|Mm7|chr7 (76159942-76160399) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cbr (0.511902) | |
| fce (0.271592) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| csp (0.161186) | |
| spl (0.143184) | |
| che (0.136314) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.511902) | |
| fce (0.271592) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| csp (0.161186) | |
| spl (0.143184) | |
| che (0.136314) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) |