Non-Coding RNA Search

Ss1.1-Mixn-0036j08.5

Sequence:


               
               AATGAAGGAGGAGCGGCTCAGCTGCACTTTGACATGACTCGGAACCTTTTCCCTTTGTTT
TCCCACTATTGCAAGAGACCAGAAAATTATTTTAAACATGTAAAAGAAGCCTGTATTATT
TTAAATTTGAATGTTGGTTCTGCTTTACTTCTGAGAGATGTCCTGCAGTCAACTTCAGGG
CAGCCTCCTGCTGCAGCAGCATTAAATGAAGTTGGTATTTATAAACTGGCTCAACAAGAT
GTTGAGATTCTCCTTAATTTGAGAACAAACTGGCCTAACACTGGAAAATAAAGTGTCTTT
ATGTTTTGGGATTTTTTTCTGTTTGAACAAAGAGCAAGCCAGTTGGATTTCAAATTGTAT
GATCAAGTTCGGAATTGAGGAAACTGGACAACTGAAGAATGAATCATTTATCATCGTGGA
CTTACAATGTTATTAAAATGCTGACCATATTTCCAGAGTCCTCTTGTTCACTTCATGCCT
GAATTTTTCAAAGGGTATTCCATGTCCATCATCTTTGAAAACTTCATCTGCAGTACACAG
ACCCAGGGTTTTTAGGGCTTCCTTATACTGTGTTAATGATATGGTGCCTCTATTTGAGGA
GTCCAGCATCTCAAACATAGCCGCAATGTTAGAGTTATCCATAAAGAAAGGCAAAGCCAC
TCCTGCTATTTTGGCAATTCTCAGCCGTTCCAATATAGATATTAAATACTGTCTTGGTTT
TTCCGGCCGGAAAAAGAGGAGGGCACTGGTGAGATAGTTTAGCAACTCCATAATCCGATG
GTTTCTCCAAATAATTCCTGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGAAGGAGGAGCGGCTCAGCTGCACTTTGACATGACTCGGAACCTTTTCCCTTTGTTT
TCCCACTATTGCAAGAGACCAGAAAATTATTTTAAACATGTAAAAGAAGCCTGTATTATT
TTAAATTTGAATGTTGGTTCTGCTTTACTTCTGAGAGATGTCCTGCAGTCAACTTCAGGG
CAGCCTCCTGCTGCAGCAGCATTAAATGAAGTTGGTATTTATAAACTGGCTCAACAAGAT
GTTGAGATTCTCCTTAATTTGAGAACAAACTGGCCTAACACTGGAAAATAAAGTGTCTTT
ATGTTTTGGGATTTTTTTCTGTTTGAACAAAGAGCAAGCCAGTTGGATTTCAAATTGTAT
GATCAAGTTCGGAATTGAGGAAACTGGACAACTGAAGAATGAATCATTTATCATCGTGGA
CTTACAATGTTATTAAAATGCTGACCATATTTCCAGAGTCCTCTTGTTCACTTCATGCCT
GAATTTTTCAAAGGGTATTCCATGTCCATCATCTTTGAAAACTTCATCTGCAGTACACAG
ACCCAGGGTTTTTAGGGCTTCCTTATACTGTGTTAATGATATGGTGCCTCTATTTGAGGA
GTCCAGCATCTCAAACATAGCCGCAATGTTAGAGTTATCCATAAAGAAAGGCAAAGCCAC
TCCTGCTATTTTGGCAATTCTCAGCCGTTCCAATATAGATATTAAATACTGTCTTGGTTT
TTCCGGCCGGAAAAAGAGGAGGGCACTGGTGAGATAGTTTAGCAACTCCATAATCCGATG
GTTTCTCCAAATAATTCCTGGCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|37674399|gb|AAQ96850.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37674399|gb|AAQ96850.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-103, gnl|bosTau2|chr4 (22694385-22694284)
               

               
               1-103, gnl|Hg17|chr7 (104799949-104800050)
               

               
               1-103, gnl|Mm7|chr12 (31247587-31247486)
               


               
               401-804, gnl|bosTau2|chr12 (44118658-44118257)
               

               
               401-804, gnl|Hg17|chr7 (104801820-104803970)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-103, gnl|bosTau2|chr4 (22694385-22694284)
               

               
               1-103, gnl|Hg17|chr7 (104799949-104800050)
               

               
               1-103, gnl|Mm7|chr12 (31247587-31247486)
               


               
               401-804, gnl|bosTau2|chr12 (44118658-44118257)
               

               
               401-804, gnl|Hg17|chr7 (104801820-104803970)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cte (1.17096)
               

               
               tes (0.415628)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.17096)
               

               
               tes (0.415628)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	1-103, gnl\|bosTau2\|chr4 (22694385-22694284)
	1-103, gnl\|Hg17\|chr7 (104799949-104800050)
	1-103, gnl\|Mm7\|chr12 (31247587-31247486)

	401-804, gnl\|bosTau2\|chr12 (44118658-44118257)
	401-804, gnl\|Hg17\|chr7 (104801820-104803970)

	cte (1.17096)
	tes (0.415628)
	rec (0.17307)
	mcp (0.170648)
	fco (0.157208)
	spl (0.143184)
	hlv (0.139256)
	ssp (0.13552)
	sug (0.127291)
	tra (0.123092)