Non-Coding RNA Search

Ss1.1-Mixn-0036k22.5

Sequence:


               
               GGAACAATGCACTGTCAACATCATCTGGGAACCTTCGGCTTGAATACGACTTGCTACTTC
AGATGCAAAACTGGATTCACAATCATGGGAAACAATGCTTTGAGATGCAGACCTTCTGGA
CAATGGACAGCAGTAGCTCCAGTATGCAGAGCTGTCAACTGCTATGAGCTACACATTACT
GGGCCAATAGTGATGAACTGCTCCAACCCTTGGGGAAGTTTCAGCTATGGATCAACCTGC
AGCTTCCACTGTCCAGAGGGTCAATTACTTAATGGCTCAGAGTTAACAGTGTGCAAAGAG
AATGGAGAGTGGTCAACTACGATGCCAACCTGCCTAGCAGGGCCATTGACTATCCAGGAA
GCCCTGACTTATTTTGGTGGAGCAGTGGCTTCTACAACAGGTTTAGTGATGGGTGGGACA
CTCCTGGCTCTGTTAAGGAAGCGCCGCAGACAAAAAGATGATGGGAAAAGCCCCTTGAGC
CCTCAAAGCCACCTAGGAACATATGGAGTTTTTACAAATGCTGCCTTTGATCCGAATCCT
TAAGAAAATGTCCTTCTCTTGGTCCCCTCACTCAACATCGACAGGATCCTATTTTTGAAC
ATCAGCCCTCCCGATAGACTTGACCATAACTGTAGCATATCTACTGCAGTTTTCTGTAAA
TACTTGTGAAATAAGGACATGGAATTTCCTTTAGATAAGCTCTAGACCAGAGCAGAAGAA
TTGTACCCACAGCCCCAACTCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACAATGCACTGTCAACATCATCTGGGAACCTTCGGCTTGAATACGACTTGCTACTTC
AGATGCAAAACTGGATTCACAATCATGGGAAACAATGCTTTGAGATGCAGACCTTCTGGA
CAATGGACAGCAGTAGCTCCAGTATGCAGAGCTGTCAACTGCTATGAGCTACACATTACT
GGGCCAATAGTGATGAACTGCTCCAACCCTTGGGGAAGTTTCAGCTATGGATCAACCTGC
AGCTTCCACTGTCCAGAGGGTCAATTACTTAATGGCTCAGAGTTAACAGTGTGCAAAGAG
AATGGAGAGTGGTCAACTACGATGCCAACCTGCCTAGCAGGGCCATTGACTATCCAGGAA
GCCCTGACTTATTTTGGTGGAGCAGTGGCTTCTACAACAGGTTTAGTGATGGGTGGGACA
CTCCTGGCTCTGTTAAGGAAGCGCCGCAGACAAAAAGATGATGGGAAAAGCCCCTTGAGC
CCTCAAAGCCACCTAGGAACATATGGAGTTTTTACAAATGCTGCCTTTGATCCGAATCCT
TAAGAAAATGTCCTTCTCTTGGTCCCCTCACTCAACATCGACAGGATCCTATTTTTGAAC
ATCAGCCCTCCCGATAGACTTGACCATAACTGTAGCATATCTACTGCAGTTTTCTGTAAA
TACTTGTGAAATAAGGACATGGAATTTCCTTTAGATAAGCTCTAGACCAGAGCAGAAGAA
TTGTACCCACAGCCCCAACTCTAC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               150-337, gnl|bosTau2|chr16 (25389453-25389266)
               

               
               150-337, gnl|Hg17|chr1 (166295775-166295588)
               

               
               150-337, gnl|Mm7|chr1 (164107273-164107460)
               


               
               549-742, gnl|bosTau2|chr16 (25383441-25383247)
               

               
               549-742, gnl|Hg17|chr1 (166290456-166290231)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-337, gnl|bosTau2|chr16 (25389453-25389266)
               

               
               150-337, gnl|Hg17|chr1 (166295775-166295588)
               

               
               150-337, gnl|Mm7|chr1 (164107273-164107460)
               


               
               549-742, gnl|bosTau2|chr16 (25383441-25383247)
               

               
               549-742, gnl|Hg17|chr1 (166290456-166290231)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	150-337, gnl\|bosTau2\|chr16 (25389453-25389266)
	150-337, gnl\|Hg17\|chr1 (166295775-166295588)
	150-337, gnl\|Mm7\|chr1 (164107273-164107460)

	549-742, gnl\|bosTau2\|chr16 (25383441-25383247)
	549-742, gnl\|Hg17\|chr1 (166290456-166290231)