Non-Coding RNA Search

Ss1.1-Mixn-0036m11.5

Sequence:


               
               CTGGATTTCATATCTTACTGAAATTCAAGATATACATAAATAAAGGACTGGGAATCTAAA
TGTAGTTATGTGGTGACTTATTAGTTCATCAGGATCAAAGTGAAGAGACAGAAAGATCCT
ATAATCTAAAAAAGGCACAGAAGTAACAAGAATGAAAAACTAAATAACTTGCTTTTAAAT
ACATAGAAGTTATCTTACATTTCCTTCCATATGAAATCAGTTTATCTTGCTAAGTGGTTA
ACAGATAAGTGTTACTTAGCATTTGACTTTACTGTGGTAAGAAAAGGACACGTTTTCATA
AGCAGTATGTGTATGGATTGTATCAGTGAAAGACATTTTAGCAAGTTACATTTTTACAAA
TTACTGATACTTTCTGGGGATGTCTGGTAGTTTTGCTGCTCTCTGGAGACAGAAATTAAA
TTAGCATGGTGCATTGCCAAGGACCAATGCCAACGCAGGAAATGGTCTGCACTGTGATCC
GTGAGGCGCTGAAAGGGCTCTACCCTCAAACACACCTCCCCCAGGGCAGATGCCCAAACC
GAACCCAGCAAATGTTAAGCATTTCATCTCTGGGCTATGAAGACAAAAGACCTTGAGAGT
AAAGGGCTTTTGAGAGAGGCTGCCCTGGGGAGCTGTTCTTAGGGACATTCTAGGAACACT
GAACAGGAACTTGGCCCCCAACACTGTTTTTTCCTATGGTCTATTTTGAATAACAGTATT
TTTCTGAATAAGTAATCAAACTGTTTCTTCTGGACTAGAGGCCAGATCTGAACCCTGATT
TTCAGAAATGTGCATTTGGTGTCTCTATAGACACTTGTACCACATCTCAAAAATCACCAA
GTTTGGGGAAATGCAACCGTAGTTTAAGAGAATGATGTGAGCAGTCATGCTTACTTACAT
AGGGAATCTGCTTTAAAAATCTGATTTCGTAGGCTCTTTTCCTGCACTAACCAGTGCAGT
TAATACCTCATTTTCAGAAACGGCAAACTCATGGCAACATTTTAAAAATGATCATGTCCT
TATATTTTAGATTGTAAGCCCACTGGGCAGGTACTGTGTCTAATGTTTTGTGTGACACAT
ATCGCATTGTTAGAGCTCAATAAACGTTCAACAGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGATTTCATATCTTACTGAAATTCAAGATATACATAAATAAAGGACTGGGAATCTAAA
TGTAGTTATGTGGTGACTTATTAGTTCATCAGGATCAAAGTGAAGAGACAGAAAGATCCT
ATAATCTAAAAAAGGCACAGAAGTAACAAGAATGAAAAACTAAATAACTTGCTTTTAAAT
ACATAGAAGTTATCTTACATTTCCTTCCATATGAAATCAGTTTATCTTGCTAAGTGGTTA
ACAGATAAGTGTTACTTAGCATTTGACTTTACTGTGGTAAGAAAAGGACACGTTTTCATA
AGCAGTATGTGTATGGATTGTATCAGTGAAAGACATTTTAGCAAGTTACATTTTTACAAA
TTACTGATACTTTCTGGGGATGTCTGGTAGTTTTGCTGCTCTCTGGAGACAGAAATTAAA
TTAGCATGGTGCATTGCCAAGGACCAATGCCAACGCAGGAAATGGTCTGCACTGTGATCC
GTGAGGCGCTGAAAGGGCTCTACCCTCAAACACACCTCCCCCAGGGCAGATGCCCAAACC
GAACCCAGCAAATGTTAAGCATTTCATCTCTGGGCTATGAAGACAAAAGACCTTGAGAGT
AAAGGGCTTTTGAGAGAGGCTGCCCTGGGGAGCTGTTCTTAGGGACATTCTAGGAACACT
GAACAGGAACTTGGCCCCCAACACTGTTTTTTCCTATGGTCTATTTTGAATAACAGTATT
TTTCTGAATAAGTAATCAAACTGTTTCTTCTGGACTAGAGGCCAGATCTGAACCCTGATT
TTCAGAAATGTGCATTTGGTGTCTCTATAGACACTTGTACCACATCTCAAAAATCACCAA
GTTTGGGGAAATGCAACCGTAGTTTAAGAGAATGATGTGAGCAGTCATGCTTACTTACAT
AGGGAATCTGCTTTAAAAATCTGATTTCGTAGGCTCTTTTCCTGCACTAACCAGTGCAGT
TAATACCTCATTTTCAGAAACGGCAAACTCATGGCAACATTTTAAAAATGATCATGTCCT
TATATTTTAGATTGTAAGCCCACTGGGCAGGTACTGTGTCTAATGTTTTGTGTGACACAT
ATCGCATTGTTAGAGCTCAATAAACGTTCAACAGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               863-975, + strand, RNAz p=0.985505

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               863-975, + strand, RNAz p=0.985505

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               6-554, gnl|bosTau2|chr21 (18103148-18103686)
               

               
               6-554, gnl|Hg17|chr15 (81595268-81594737)
               

               
               6-554, gnl|Mm7|chr7 (77755583-77755081)
               


               
               596-1117, gnl|bosTau2|chr21 (18103695-18104210)
               

               
               596-1117, gnl|Hg17|chr15 (81594699-81593874)
               

               
               596-1117, gnl|Mm7|chr7 (77755050-77754539)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-554, gnl|bosTau2|chr21 (18103148-18103686)
               

               
               6-554, gnl|Hg17|chr15 (81595268-81594737)
               

               
               6-554, gnl|Mm7|chr7 (77755583-77755081)
               


               
               596-1117, gnl|bosTau2|chr21 (18103695-18104210)
               

               
               596-1117, gnl|Hg17|chr15 (81594699-81593874)
               

               
               596-1117, gnl|Mm7|chr7 (77755050-77754539)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               fat (0.294855)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	6-554, gnl\|bosTau2\|chr21 (18103148-18103686)
	6-554, gnl\|Hg17\|chr15 (81595268-81594737)
	6-554, gnl\|Mm7\|chr7 (77755583-77755081)

	596-1117, gnl\|bosTau2\|chr21 (18103695-18104210)
	596-1117, gnl\|Hg17\|chr15 (81594699-81593874)
	596-1117, gnl\|Mm7\|chr7 (77755050-77754539)

	fat (0.294855)
	hyp (0.285673)
	ebs (0.236602)
	cst (0.140036)
	lyg (0.133103)
	ova (0.129132)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)