Ss1.1-Mixn-0037a19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGCTGCCGCCGCTGCCGCCGGCCGCGGCTGCTCTCCCAAGATGGCGGCTCCTCCGGGC GAGTACTTCAGCGTTGGGAGCCAGGTGTCGTGCCGGACGTGCCAGGAGCAGCGGCTGCAG GGCGAGGTGGTAGCCTTCGACTACCAGTCCAAAATGCTGGCTTTAAAATGTCCCTCTTCC AGTGGAAAGCCCAACCACGCAGACATCTTGCTCATAAACTTACAGTATGTTTCAGAAGTG GAAATAATTAATGACCGAACAGAAACCCCTCCTCCCCTAGCTTCACTCAATGTTAGTAAG CTTGCCAGCAAAGCACGGACAGAGAAGGAGGAGAAGCTGAGCCAGGCCTATGCAATCAGC GCTGGTGTCTCCCTAGAGGGCCAGCAGCTCTTCCAGACCATACACAAGACCATTAAAGAC TGTAAATGGCAAGAAAAAAACATCGTAGTCATGGAAGAAGTTGTTATTACACCCCCATAT CAAGTGGAAAACTGTAAAGGCAAAGAGGGGAGTGCACTGAGCCATGTACGCAAAATAGTT GAAAAACATTTTAGAGACGTGGAAAGCCAAAAGATACTGCAGCGTTCACAAGCCCAGCAA CCACAGAAGGAGGCTGCTCTGTCATCCTGAGTCCACACATACGGAGGACTCTTCCAGCAT CCAGCCAAGGAGGCGATGGTGGTGGCTTCAGCGGAGGCAGGCCGGGGGAGGGAAGGGATT CTATATTTCCTGTTGGCTCTTGTTAACAAAGGGTCGGCATTTCCAAACCTTAGACTTGAA CAAAGAAAACACCCAACAAAAAAGAACAAGAGAATAATTTAAAAGTTGAATCATTACTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGCTGCCGCCGCTGCCGCCGGCCGCGGCTGCTCTCCCAAGATGGCGGCTCCTCCGGGC GAGTACTTCAGCGTTGGGAGCCAGGTGTCGTGCCGGACGTGCCAGGAGCAGCGGCTGCAG GGCGAGGTGGTAGCCTTCGACTACCAGTCCAAAATGCTGGCTTTAAAATGTCCCTCTTCC AGTGGAAAGCCCAACCACGCAGACATCTTGCTCATAAACTTACAGTATGTTTCAGAAGTG GAAATAATTAATGACCGAACAGAAACCCCTCCTCCCCTAGCTTCACTCAATGTTAGTAAG CTTGCCAGCAAAGCACGGACAGAGAAGGAGGAGAAGCTGAGCCAGGCCTATGCAATCAGC GCTGGTGTCTCCCTAGAGGGCCAGCAGCTCTTCCAGACCATACACAAGACCATTAAAGAC TGTAAATGGCAAGAAAAAAACATCGTAGTCATGGAAGAAGTTGTTATTACACCCCCATAT CAAGTGGAAAACTGTAAAGGCAAAGAGGGGAGTGCACTGAGCCATGTACGCAAAATAGTT GAAAAACATTTTAGAGACGTGGAAAGCCAAAAGATACTGCAGCGTTCACAAGCCCAGCAA CCACAGAAGGAGGCTGCTCTGTCATCCTGAGTCCACACATACGGAGGACTCTTCCAGCAT CCAGCCAAGGAGGCGATGGTGGTGGCTTCAGCGGAGGCAGGCCGGGGGAGGGAAGGGATT CTATATTTCCTGTTGGCTCTTGTTAACAAAGGGTCGGCATTTCCAAACCTTAGACTTGAA CAAAGAAAACACCCAACAAAAAAGAACAAGAGAATAATTTAAAAGTTGAATCATTACTTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-166, gnl|bosTau2|chr19 (38208978-38209143) | |
| 1-166, gnl|canFam2|chr9 (22625648-22625513) | |
| 1-166, gnl|danRer3|chr3 (16613931-16614068) | |
| 1-166, gnl|dasNov1|scaffold_7935 (47943-47808) | |
| 1-166, gnl|echTel1|scaffold_325085 (42964-42829) | |
| 1-166, gnl|fr1|chrUn (49891331-49891480) | |
| 1-166, gnl|hg17|chr17 (39499350-39499485) | |
| 1-166, gnl|Hg17|chr17 (39499523-39499358) | |
| 1-166, gnl|loxAfr1|scaffold_4197 (47485-47620) | |
| 1-166, gnl|mm7|chr11 (102294114-102294249) | |
| 1-166, gnl|Mm7|chr11 (102294287-102294122) | |
| 1-166, gnl|monDom2|scaffold_18 (42754316-42754181) | |
| 1-166, gnl|oryCun1|scaffold_199959 (57004-57139) | |
| 1-166, gnl|panTro1|chr19 (42685671-42685784) | |
| 1-166, gnl|rheMac2|chr16 (54147603-54147738) | |
| 1-166, gnl|rn3|chr10 (91268116-91268251) | |
| 1-166, gnl|tetNig1|chr2 (727334-727471) | |
| 1-166, gnl|xenTro1|scaffold_316 (861115-860983) | |
| 167-300, gnl|bosTau2|chr19 (38210960-38211093) | |
| 167-300, gnl|canFam2|chr9 (22627587-22627400) | |
| 167-300, gnl|danRer3|chr3 (16609626-16609784) | |
| 167-300, gnl|dasNov1|scaffold_7935 (50016-49827) | |
| 167-300, gnl|echTel1|scaffold_325085 (44975-44788) | |
| 167-300, gnl|fr1|chrUn (49889807-49889980) | |
| 167-300, gnl|galGal2|chrUn (157874319-157874129) | |
| 167-300, gnl|hg17|chr17 (39496689-39496880) | |
| 167-300, gnl|Hg17|chr17 (39496828-39496695) | |
| 167-300, gnl|loxAfr1|scaffold_4197 (45559-45748) | |
| 167-300, gnl|mm7|chr11 (102291891-102292066) | |
| 167-300, gnl|Mm7|chr11 (102292030-102291897) | |
| 167-300, gnl|monDom2|scaffold_18 (42756472-42756287) | |
| 167-300, gnl|oryCun1|scaffold_199959 (55137-55325) | |
| 167-300, gnl|panTro1|chr19 (42682967-42683158) | |
| 167-300, gnl|rheMac2|chr16 (54144515-54144705) | |
| 167-300, gnl|rn3|chr10 (91265734-91265909) | |
| 167-300, gnl|tetNig1|chr2 (725920-726061) | |
| 538-840, gnl|bosTau2|chr19 (38227078-38227380) | |
| 538-840, gnl|Hg17|chr17 (39469194-39468895) | |
| 538-840, gnl|Mm7|chr11 (102273206-102272907) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-166, gnl|bosTau2|chr19 (38208978-38209143) | |
| 1-166, gnl|canFam2|chr9 (22625648-22625513) | |
| 1-166, gnl|danRer3|chr3 (16613931-16614068) | |
| 1-166, gnl|dasNov1|scaffold_7935 (47943-47808) | |
| 1-166, gnl|echTel1|scaffold_325085 (42964-42829) | |
| 1-166, gnl|fr1|chrUn (49891331-49891480) | |
| 1-166, gnl|hg17|chr17 (39499350-39499485) | |
| 1-166, gnl|Hg17|chr17 (39499523-39499358) | |
| 1-166, gnl|loxAfr1|scaffold_4197 (47485-47620) | |
| 1-166, gnl|mm7|chr11 (102294114-102294249) | |
| 1-166, gnl|Mm7|chr11 (102294287-102294122) | |
| 1-166, gnl|monDom2|scaffold_18 (42754316-42754181) | |
| 1-166, gnl|oryCun1|scaffold_199959 (57004-57139) | |
| 1-166, gnl|panTro1|chr19 (42685671-42685784) | |
| 1-166, gnl|rheMac2|chr16 (54147603-54147738) | |
| 1-166, gnl|rn3|chr10 (91268116-91268251) | |
| 1-166, gnl|tetNig1|chr2 (727334-727471) | |
| 1-166, gnl|xenTro1|scaffold_316 (861115-860983) | |
| 167-300, gnl|bosTau2|chr19 (38210960-38211093) | |
| 167-300, gnl|canFam2|chr9 (22627587-22627400) | |
| 167-300, gnl|danRer3|chr3 (16609626-16609784) | |
| 167-300, gnl|dasNov1|scaffold_7935 (50016-49827) | |
| 167-300, gnl|echTel1|scaffold_325085 (44975-44788) | |
| 167-300, gnl|fr1|chrUn (49889807-49889980) | |
| 167-300, gnl|galGal2|chrUn (157874319-157874129) | |
| 167-300, gnl|hg17|chr17 (39496689-39496880) | |
| 167-300, gnl|Hg17|chr17 (39496828-39496695) | |
| 167-300, gnl|loxAfr1|scaffold_4197 (45559-45748) | |
| 167-300, gnl|mm7|chr11 (102291891-102292066) | |
| 167-300, gnl|Mm7|chr11 (102292030-102291897) | |
| 167-300, gnl|monDom2|scaffold_18 (42756472-42756287) | |
| 167-300, gnl|oryCun1|scaffold_199959 (55137-55325) | |
| 167-300, gnl|panTro1|chr19 (42682967-42683158) | |
| 167-300, gnl|rheMac2|chr16 (54144515-54144705) | |
| 167-300, gnl|rn3|chr10 (91265734-91265909) | |
| 167-300, gnl|tetNig1|chr2 (725920-726061) | |
| 538-840, gnl|bosTau2|chr19 (38227078-38227380) | |
| 538-840, gnl|Hg17|chr17 (39469194-39468895) | |
| 538-840, gnl|Mm7|chr11 (102273206-102272907) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| sin (0.349895) | |
| eye (0.341006) | |
| cly (0.241284) | |
| fcc (0.197785) | |
| cut (0.169924) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.349895) | |
| eye (0.341006) | |
| cly (0.241284) | |
| fcc (0.197785) | |
| cut (0.169924) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| jej (0.0989218) |