Non-Coding RNA Search

Ss1.1-Mixn-0037c24.5

Sequence:


               
               CAAGCAACTCAACTCTCAGCCCAGCTCCTGACACCATGTGCTGTTCCACGAGCTTCTGTG
GATTTCCCATCTGCTCCACCGGTGGGACCTGTGGCTCCAGCTGCTGCCAGCCAAGCTGCT
CCCAGACTAGCTGCTGCCCATCAACCTGTAGCCAGACCAGCTGCTGCCAGCCACCCTGCG
TCCAGACCAGCTGCTGCCAGCCACCCTGCGTCCAGACCAGCTGCTGCCAGACCAGTGGCT
GCGAGATCGGCAGTGGCATTGGCGGTGGCATTGGCGGTGGCATTGGCGGTGGCCAGGAGG
GTAGCAGTGGAGCTCGGAGCTACCTCATCAGGTGGTGCCGCCCTGACTGCCGCGTGGAGG
GCACCGTCCTGCCACCTTGCTGCGTGGTGAGCTGCACGCCCCCCACCTGCTGCCAGCTGC
ACCACGCCCAGGCGTCCTGCTGCCGCCCCTCCTACTGTGGGCAGTCCTGCTGCCTGCCAG
CCCTGCTGCTGCCAGTGCTCTGAACCCCCCTGCTGTGAGCCCACCTGGCTAAAACCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGCAACTCAACTCTCAGCCCAGCTCCTGACACCATGTGCTGTTCCACGAGCTTCTGTG
GATTTCCCATCTGCTCCACCGGTGGGACCTGTGGCTCCAGCTGCTGCCAGCCAAGCTGCT
CCCAGACTAGCTGCTGCCCATCAACCTGTAGCCAGACCAGCTGCTGCCAGCCACCCTGCG
TCCAGACCAGCTGCTGCCAGCCACCCTGCGTCCAGACCAGCTGCTGCCAGACCAGTGGCT
GCGAGATCGGCAGTGGCATTGGCGGTGGCATTGGCGGTGGCATTGGCGGTGGCCAGGAGG
GTAGCAGTGGAGCTCGGAGCTACCTCATCAGGTGGTGCCGCCCTGACTGCCGCGTGGAGG
GCACCGTCCTGCCACCTTGCTGCGTGGTGAGCTGCACGCCCCCCACCTGCTGCCAGCTGC
ACCACGCCCAGGCGTCCTGCTGCCGCCCCTCCTACTGTGGGCAGTCCTGCTGCCTGCCAG
CCCTGCTGCTGCCAGTGCTCTGAACCCCCCTGCTGTGAGCCCACCTGGCTAAAACCTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8IUG1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8IUG1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-369, - strand, RNAz p=0.998627

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-369, - strand, RNAz p=0.998627

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-527, gnl|bosTau2|chr19 (33638559-33639071)
               

               
               5-527, gnl|Hg17|chr17 (36444630-36444115)
               

               
               5-527, gnl|Mm7|chr11 (99700394-99699856)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-527, gnl|bosTau2|chr19 (33638559-33639071)
               

               
               5-527, gnl|Hg17|chr17 (36444630-36444115)
               

               
               5-527, gnl|Mm7|chr11 (99700394-99699856)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.36785)
               

               
               ski (0.146735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               ski (0.146735)

	5-527, gnl\|bosTau2\|chr19 (33638559-33639071)
	5-527, gnl\|Hg17\|chr17 (36444630-36444115)
	5-527, gnl\|Mm7\|chr11 (99700394-99699856)