Non-Coding RNA Search

Ss1.1-Mixn-0037e14.5

Sequence:


               
               ATTAAATTATAAATTAGCAGCACAACTGTTTTCCTATCCCTAGGGTAACTGTGCAGCTAA
GTCCCACCTGAAGCATGTCTCAATTTCAGCAGGAGTACACGTCGGAGAAAACATCAGGCA
TCATTGTTCCACCTCCTTTATGGCCTTTAGTTGCTGCAGTTTTCCCACCACATCAAGTCA
TAATTTTATTCAGTCCCAATATTTAAGCTGTTTCCAACCTTTTCCTGTAATAAACTCTAG
CCTAAACATACTTGTAAACCAGTGTCTGTGCATAGCTTTTGAATGCATTCCTATAAGTTG
TCTGCTGGGTTAAGGGGTTGAAAACCTCTTAGTGGACGAAAAGCACACATCTCCGTGGGA
GCCAAGAGCTCCCACAGGGGCTTCAGGGTAGAAGAGCAGAGAACACTTCTCTGCAGTTCT
GCTTCAAAAAGTACCATGTGGTTTTTTTCCAAAAACTAAGTGTAAAAATCCATTACCCTT
CTATTTGCGTTATGCTGTTATACGTATACTTTCTTTTCTCAATTCCAGAGAGAATTTATC
CAGTTCTGCAAAACCCTGTACAGCATGTTCCATGAAGACCCAGAGGAGAATGATTTGTAT
CAGGCCATTGCCACGGTGACCACGCTGCTGCTGCAGATCGGGGAGGTAGGGCAGCGCGGC
AGCGGCTCTGGAAGCTGCTCTCTGGAGGGCGGGGACGAGCCACTGGCTCCGGCTCCTTCT
GAGCAGGACTCGGTTTTCGTGGACACCGAGGCCGGGAAGAGTCCCCAGGAGTCCCAGGCA
TTTCCTGAACAGGCCGAGGGGGACTGGACTGTGTCCCTGGAACATATTTTAGCCTCACTT
CTGACTGAACAGTCATTAGTAAACTTTTTTGAAAAGCCACTGGACATTAAATCCAAACTT
GAAAACGCCAAGATCAATCAGTACAGCCTCAAAACTTGTGAGATGAGCCGCCAATTGCAG
CCTGAACTCAAGCTGAGCAGCCCGTAGCAGGAGCACATCTGCTGAGCCCCTCCTCCAAAC
CAAAGCACAGAGCAGCTTAAGCTGGTCGGCCCATAATCCAGATGTGTGCAGTCTGCCAGC
AGTACCTGACATGCTGGGCACCTGGCCAGCCACAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAATTATAAATTAGCAGCACAACTGTTTTCCTATCCCTAGGGTAACTGTGCAGCTAA
GTCCCACCTGAAGCATGTCTCAATTTCAGCAGGAGTACACGTCGGAGAAAACATCAGGCA
TCATTGTTCCACCTCCTTTATGGCCTTTAGTTGCTGCAGTTTTCCCACCACATCAAGTCA
TAATTTTATTCAGTCCCAATATTTAAGCTGTTTCCAACCTTTTCCTGTAATAAACTCTAG
CCTAAACATACTTGTAAACCAGTGTCTGTGCATAGCTTTTGAATGCATTCCTATAAGTTG
TCTGCTGGGTTAAGGGGTTGAAAACCTCTTAGTGGACGAAAAGCACACATCTCCGTGGGA
GCCAAGAGCTCCCACAGGGGCTTCAGGGTAGAAGAGCAGAGAACACTTCTCTGCAGTTCT
GCTTCAAAAAGTACCATGTGGTTTTTTTCCAAAAACTAAGTGTAAAAATCCATTACCCTT
CTATTTGCGTTATGCTGTTATACGTATACTTTCTTTTCTCAATTCCAGAGAGAATTTATC
CAGTTCTGCAAAACCCTGTACAGCATGTTCCATGAAGACCCAGAGGAGAATGATTTGTAT
CAGGCCATTGCCACGGTGACCACGCTGCTGCTGCAGATCGGGGAGGTAGGGCAGCGCGGC
AGCGGCTCTGGAAGCTGCTCTCTGGAGGGCGGGGACGAGCCACTGGCTCCGGCTCCTTCT
GAGCAGGACTCGGTTTTCGTGGACACCGAGGCCGGGAAGAGTCCCCAGGAGTCCCAGGCA
TTTCCTGAACAGGCCGAGGGGGACTGGACTGTGTCCCTGGAACATATTTTAGCCTCACTT
CTGACTGAACAGTCATTAGTAAACTTTTTTGAAAAGCCACTGGACATTAAATCCAAACTT
GAAAACGCCAAGATCAATCAGTACAGCCTCAAAACTTGTGAGATGAGCCGCCAATTGCAG
CCTGAACTCAAGCTGAGCAGCCCGTAGCAGGAGCACATCTGCTGAGCCCCTCCTCCAAAC
CAAAGCACAGAGCAGCTTAAGCTGGTCGGCCCATAATCCAGATGTGTGCAGTCTGCCAGC
AGTACCTGACATGCTGGGCACCTGGCCAGCCACAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61854198|ref|XP_605552.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61854198|ref|XP_605552.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               613-723, - strand, RNAz p=0.557115

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               613-723, - strand, RNAz p=0.557115

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               189-1035, gnl|bosTau2|chr8 (20224442-20223584)
               

               
               189-1035, gnl|Hg17|chr2 (101083886-101082747)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-1035, gnl|bosTau2|chr8 (20224442-20223584)
               

               
               189-1035, gnl|Hg17|chr2 (101083886-101082747)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hea (0.204499)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               bla (0.124347)

	189-1035, gnl\|bosTau2\|chr8 (20224442-20223584)
	189-1035, gnl\|Hg17\|chr2 (101083886-101082747)