Ss1.1-Mixn-0037g22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATGAAAATGACATCAGCTTACTCCATGAGTTGGCCAGCACCAGGCAGATTGACTTCTG GAAACCAGATTCTGTCACACAAATCAAACCTCACAGTACAGTTGACTTCCGTGTGAAAGC AGAAGATATTTTGGCTGTGGAAGACTTTCTGGAGCAGAATGAACTACAATATGAGGTACT CATAAACAACCTGAGATCTGTGCTAGAGGCTCAGTTTGACAGCAGAGTCCGTACAACTGG ACACAGTTATGAGAAGTACAACAACTGGGAAACGATAGAGGCTTGGACTAAGCAAGTCAC CAGTGAAAATCCAGACCTCATCTCTCGCACAGCCATCGGAACTACATTTTTAGGAAACAA TATATACCTCCTCAAGGTTGGCAAACCTGGACCAAATAAGCCTGCCATTTTCATGGACTG TGGTTTCCATGCCAGAGAATGGATTTCCCATGCATTTTGCCAGTGGTTTGTGAGAGAGGC TGTTCTCACCTATGGATATGAGAGTCACATGACAGAATTCCTCAACAAGCTAGACTTTTA TGTCTTGCCTGTGCTCAATATTGATGGCTACATCTACACCTGGACCAAGAACCGAATGTG GAGAAAGACCCGCTCTACCAATGCTGGAACTACCTGCATTGGCACAGACCCCAACAGAAA TTTTGATGCTGGGTGGTGCACAACTGGAGCCTCTACAGACCCCTGCGATGAGACTTACTG TGGATCTGCTGCAGAGTCTGAAAAAGAGACCAAGGCCCTGGCTGATTTTATACGCAACAA CCTCTCCTCCATCAAAGCATACCTGACGATCCACTCATACTCACAGATGATACTCTACCC TTACTCCTATGATTACAAACTCCCCGAGAACAATGCTGAGTTGAATAACCTGGCTAAGGC TGCCGTGAAAGAACTTGCTACACTGTATGGCACCAAGTACACATACGGCCCAGGAGCTAC AACAATCTATCCTGCTGCTGGGGGCTCTGATGACTGGGCTTATGACCAAGGAATCAAATA TTCCTTCACCTTTGAACTCCGGGATAAAGGCAGATATGGTTTTATCCTCCCTGAATCCCA GATCCAGGCAACCTGTGAGGAAACAATGCTGGCGATCAAATATGTTACTAACTATGTCCT GGGACATCTGTACTAGTCTGGAGTGCTAAAAGCCTTATTTCTAAATGTTGACTCCTGGTT TCTTTTCTTATCTTGAATTCCTGCTTTTGTTTGCTTGGATGTTTTCCAGATCCTAATCTT TCTTTTAAGCTCCTGGTTCTTCTAAACTACCTGGATCTTTAATACTGATCACAATAAAAG AGAATCACTATAATTAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATGAAAATGACATCAGCTTACTCCATGAGTTGGCCAGCACCAGGCAGATTGACTTCTG GAAACCAGATTCTGTCACACAAATCAAACCTCACAGTACAGTTGACTTCCGTGTGAAAGC AGAAGATATTTTGGCTGTGGAAGACTTTCTGGAGCAGAATGAACTACAATATGAGGTACT CATAAACAACCTGAGATCTGTGCTAGAGGCTCAGTTTGACAGCAGAGTCCGTACAACTGG ACACAGTTATGAGAAGTACAACAACTGGGAAACGATAGAGGCTTGGACTAAGCAAGTCAC CAGTGAAAATCCAGACCTCATCTCTCGCACAGCCATCGGAACTACATTTTTAGGAAACAA TATATACCTCCTCAAGGTTGGCAAACCTGGACCAAATAAGCCTGCCATTTTCATGGACTG TGGTTTCCATGCCAGAGAATGGATTTCCCATGCATTTTGCCAGTGGTTTGTGAGAGAGGC TGTTCTCACCTATGGATATGAGAGTCACATGACAGAATTCCTCAACAAGCTAGACTTTTA TGTCTTGCCTGTGCTCAATATTGATGGCTACATCTACACCTGGACCAAGAACCGAATGTG GAGAAAGACCCGCTCTACCAATGCTGGAACTACCTGCATTGGCACAGACCCCAACAGAAA TTTTGATGCTGGGTGGTGCACAACTGGAGCCTCTACAGACCCCTGCGATGAGACTTACTG TGGATCTGCTGCAGAGTCTGAAAAAGAGACCAAGGCCCTGGCTGATTTTATACGCAACAA CCTCTCCTCCATCAAAGCATACCTGACGATCCACTCATACTCACAGATGATACTCTACCC TTACTCCTATGATTACAAACTCCCCGAGAACAATGCTGAGTTGAATAACCTGGCTAAGGC TGCCGTGAAAGAACTTGCTACACTGTATGGCACCAAGTACACATACGGCCCAGGAGCTAC AACAATCTATCCTGCTGCTGGGGGCTCTGATGACTGGGCTTATGACCAAGGAATCAAATA TTCCTTCACCTTTGAACTCCGGGATAAAGGCAGATATGGTTTTATCCTCCCTGAATCCCA GATCCAGGCAACCTGTGAGGAAACAATGCTGGCGATCAAATATGTTACTAACTATGTCCT GGGACATCTGTACTAGTCTGGAGTGCTAAAAGCCTTATTTCTAAATGTTGACTCCTGGTT TCTTTTCTTATCTTGAATTCCTGCTTTTGTTTGCTTGGATGTTTTCCAGATCCTAATCTT TCTTTTAAGCTCCTGGTTCTTCTAAACTACCTGGATCTTTAATACTGATCACAATAAAAG AGAATCACTATAATTAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 47-175, gnl|bosTau2|chr17 (16492792-16492664) | |
| 47-175, gnl|Hg17|chr3 (150034980-150035108) | |
| 47-175, gnl|Mm7|chr3 (20001309-20001181) | |
| 274-378, gnl|bosTau2|chr17 (16485969-16485865) | |
| 274-378, gnl|canFam2|chr23 (46746773-46746909) | |
| 274-378, gnl|danRer3|chr24 (3846018-3846155) | |
| 274-378, gnl|dasNov1|scaffold_9119 (82692-82554) | |
| 274-378, gnl|echTel1|scaffold_317895 (69548-69410) | |
| 274-378, gnl|fr1|chrUn (30549877-30549990) | |
| 274-378, gnl|galGal2|chr9 (11842487-11842636) | |
| 274-378, gnl|hg17|chr3 (150041348-150041486) | |
| 274-378, gnl|Hg17|chr3 (150041358-150041462) | |
| 274-378, gnl|mm7|chr3 (19997279-19997143) | |
| 274-378, gnl|Mm7|chr3 (19997267-19997163) | |
| 274-378, gnl|monDom2|scaffold_28 (20447732-20447870) | |
| 274-378, gnl|oryCun1|scaffold_134897 (261-399) | |
| 274-378, gnl|panTro1|chr2 (153079561-153079699) | |
| 274-378, gnl|rheMac2|chr2 (138950134-138949996) | |
| 274-378, gnl|rn3|chr2 (105373041-105372906) | |
| 274-378, gnl|xenTro1|scaffold_275 (509896-509766) | |
| 443-587, gnl|bosTau2|chr17 (16482313-16482168) | |
| 443-587, gnl|Hg17|chr3 (150044926-150045071) | |
| 443-587, gnl|Mm7|chr3 (19994763-19994619) | |
| 685-883, gnl|bosTau2|chr17 (16480809-16480611) | |
| 685-883, gnl|canFam2|chr23 (46751797-46752010) | |
| 685-883, gnl|danRer3|chr24 (3849558-3849770) | |
| 685-883, gnl|dasNov1|scaffold_8608 (27422-27209) | |
| 685-883, gnl|echTel1|scaffold_317895 (68376-68163) | |
| 685-883, gnl|fr1|chrUn (30551006-30551218) | |
| 685-883, gnl|galGal2|chr9 (11845693-11845906) | |
| 685-883, gnl|hg17|chr3 (150045904-150046117) | |
| 685-883, gnl|Hg17|chr3 (150045913-150046111) | |
| 685-883, gnl|loxAfr1|scaffold_15938 (47118-46905) | |
| 685-883, gnl|mm7|chr3 (19993558-19993345) | |
| 685-883, gnl|Mm7|chr3 (19993547-19993349) | |
| 685-883, gnl|monDom2|scaffold_28 (20454386-20454599) | |
| 685-883, gnl|oryCun1|scaffold_178532 (9413-9626) | |
| 685-883, gnl|panTro1|chr2_random (16646440-16646227) | |
| 685-883, gnl|rheMac2|chr2 (138945601-138945388) | |
| 685-883, gnl|rn3|chr2 (105369058-105368845) | |
| 685-883, gnl|tetNig1|chr6 (3383303-3383090) | |
| 685-883, gnl|xenTro1|scaffold_275 (507688-507485) | |
| 969-1340, gnl|bosTau2|chr17 (16465985-16465613) | |
| 969-1340, gnl|Hg17|chr3 (150060300-150060671) | |
| 969-1340, gnl|Mm7|chr3 (19981754-19981398) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-175, gnl|bosTau2|chr17 (16492792-16492664) | |
| 47-175, gnl|Hg17|chr3 (150034980-150035108) | |
| 47-175, gnl|Mm7|chr3 (20001309-20001181) | |
| 274-378, gnl|bosTau2|chr17 (16485969-16485865) | |
| 274-378, gnl|canFam2|chr23 (46746773-46746909) | |
| 274-378, gnl|danRer3|chr24 (3846018-3846155) | |
| 274-378, gnl|dasNov1|scaffold_9119 (82692-82554) | |
| 274-378, gnl|echTel1|scaffold_317895 (69548-69410) | |
| 274-378, gnl|fr1|chrUn (30549877-30549990) | |
| 274-378, gnl|galGal2|chr9 (11842487-11842636) | |
| 274-378, gnl|hg17|chr3 (150041348-150041486) | |
| 274-378, gnl|Hg17|chr3 (150041358-150041462) | |
| 274-378, gnl|mm7|chr3 (19997279-19997143) | |
| 274-378, gnl|Mm7|chr3 (19997267-19997163) | |
| 274-378, gnl|monDom2|scaffold_28 (20447732-20447870) | |
| 274-378, gnl|oryCun1|scaffold_134897 (261-399) | |
| 274-378, gnl|panTro1|chr2 (153079561-153079699) | |
| 274-378, gnl|rheMac2|chr2 (138950134-138949996) | |
| 274-378, gnl|rn3|chr2 (105373041-105372906) | |
| 274-378, gnl|xenTro1|scaffold_275 (509896-509766) | |
| 443-587, gnl|bosTau2|chr17 (16482313-16482168) | |
| 443-587, gnl|Hg17|chr3 (150044926-150045071) | |
| 443-587, gnl|Mm7|chr3 (19994763-19994619) | |
| 685-883, gnl|bosTau2|chr17 (16480809-16480611) | |
| 685-883, gnl|canFam2|chr23 (46751797-46752010) | |
| 685-883, gnl|danRer3|chr24 (3849558-3849770) | |
| 685-883, gnl|dasNov1|scaffold_8608 (27422-27209) | |
| 685-883, gnl|echTel1|scaffold_317895 (68376-68163) | |
| 685-883, gnl|fr1|chrUn (30551006-30551218) | |
| 685-883, gnl|galGal2|chr9 (11845693-11845906) | |
| 685-883, gnl|hg17|chr3 (150045904-150046117) | |
| 685-883, gnl|Hg17|chr3 (150045913-150046111) | |
| 685-883, gnl|loxAfr1|scaffold_15938 (47118-46905) | |
| 685-883, gnl|mm7|chr3 (19993558-19993345) | |
| 685-883, gnl|Mm7|chr3 (19993547-19993349) | |
| 685-883, gnl|monDom2|scaffold_28 (20454386-20454599) | |
| 685-883, gnl|oryCun1|scaffold_178532 (9413-9626) | |
| 685-883, gnl|panTro1|chr2_random (16646440-16646227) | |
| 685-883, gnl|rheMac2|chr2 (138945601-138945388) | |
| 685-883, gnl|rn3|chr2 (105369058-105368845) | |
| 685-883, gnl|tetNig1|chr6 (3383303-3383090) | |
| 685-883, gnl|xenTro1|scaffold_275 (507688-507485) | |
| 969-1340, gnl|bosTau2|chr17 (16465985-16465613) | |
| 969-1340, gnl|Hg17|chr3 (150060300-150060671) | |
| 969-1340, gnl|Mm7|chr3 (19981754-19981398) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (37.7537) |