Ss1.1-Mixn-0037i02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGGGAAGACCTTCTCTCAAAGTGGGAGCAGGAATGTGCACATGAGAAAGCATCACTTG CAGATGGGAGCAGCTGGGAGTCAAGAGCAAGAACAAACTGCTGAGCCACTAATGGGCAGT AATTTGCTTGAAGAGGCTTCAGTAACCAGTAAAAACTTGGTGTCTATGAATTCTCAGCCC AGCCTTGGTGGAGAGCCCTTGGACCTTCCAAATACCAATTCTATCCTAGGAGTTGATGAT GAGGTGCTTGCTGAAGGATCCCCACGTCCCCTGTCTTCAGTGCCTGATGTGACACATCAT TTGGTGACCATGCAGTCAGGGAGGCAGTCATATGAGGTTTCTGTCTTAACTGCCGTGAAT CCACAGGAGTTACTAAACCAAGGAGATTTAACTGAAAGACAGACATGAGAATGAGTGCCT ACTCCTGGAAGAGCAGCTCTGTCTGATCCCAGAGTGCAGACAGTGGGAACAGGATGCTTT GGCTCACAATTTGCCAGAACCAAAATGAATCAGTGAAGGACAAGACCCTGCTTTTGCCTC TGTTCATCTTTCCTGGCCTAGAAGTTCAGTGTAGGAGAGTGTCTCTTCAACTGCCATCTG ATTCAGACAAGGAAGAAAGCAGGGAATGTGGGCTGGGTAACTGTCCCTACCTCTCTTCCC ACTGCAAAAGTTTGGGATAGACTTCTCCCAAAAGTGAATTTGAGTACGTGTTGGCTGAAG TTTCCCAGTGTGACTGTGGAAGGGAGGTTTTCCTTTGAAGAGTTTTTATCCCAGGTTGAG CTTCTTTTCACACGAGTGAACTAAATCCTGCCACCGACTGTAAAACTTCACCAAGAAGTT GCGCTTTCAAGATGCCTTGTTGCTTTGGAGAAGGGAGTGACATTCTCCCTTTAGCAACCT GAGTAAGAGACTCTTTCCCCACTGGGCTGCAAAGAAAATAAATTACTTGAATCTCTGCTT GGCCCAGGTTGAGGTACTGTCTTGTCCTCTATGCCTCTACTTGGCCACTTTGCTTTCTTT GTTTATGGAACATATAGTAGCATGTTAAGAGGTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGGGAAGACCTTCTCTCAAAGTGGGAGCAGGAATGTGCACATGAGAAAGCATCACTTG CAGATGGGAGCAGCTGGGAGTCAAGAGCAAGAACAAACTGCTGAGCCACTAATGGGCAGT AATTTGCTTGAAGAGGCTTCAGTAACCAGTAAAAACTTGGTGTCTATGAATTCTCAGCCC AGCCTTGGTGGAGAGCCCTTGGACCTTCCAAATACCAATTCTATCCTAGGAGTTGATGAT GAGGTGCTTGCTGAAGGATCCCCACGTCCCCTGTCTTCAGTGCCTGATGTGACACATCAT TTGGTGACCATGCAGTCAGGGAGGCAGTCATATGAGGTTTCTGTCTTAACTGCCGTGAAT CCACAGGAGTTACTAAACCAAGGAGATTTAACTGAAAGACAGACATGAGAATGAGTGCCT ACTCCTGGAAGAGCAGCTCTGTCTGATCCCAGAGTGCAGACAGTGGGAACAGGATGCTTT GGCTCACAATTTGCCAGAACCAAAATGAATCAGTGAAGGACAAGACCCTGCTTTTGCCTC TGTTCATCTTTCCTGGCCTAGAAGTTCAGTGTAGGAGAGTGTCTCTTCAACTGCCATCTG ATTCAGACAAGGAAGAAAGCAGGGAATGTGGGCTGGGTAACTGTCCCTACCTCTCTTCCC ACTGCAAAAGTTTGGGATAGACTTCTCCCAAAAGTGAATTTGAGTACGTGTTGGCTGAAG TTTCCCAGTGTGACTGTGGAAGGGAGGTTTTCCTTTGAAGAGTTTTTATCCCAGGTTGAG CTTCTTTTCACACGAGTGAACTAAATCCTGCCACCGACTGTAAAACTTCACCAAGAAGTT GCGCTTTCAAGATGCCTTGTTGCTTTGGAGAAGGGAGTGACATTCTCCCTTTAGCAACCT GAGTAAGAGACTCTTTCCCCACTGGGCTGCAAAGAAAATAAATTACTTGAATCTCTGCTT GGCCCAGGTTGAGGTACTGTCTTGTCCTCTATGCCTCTACTTGGCCACTTTGCTTTCTTT GTTTATGGAACATATAGTAGCATGTTAAGAGGTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 801-1054, - strand, RNAz p=0.966386 | |
| 802-899, + strand, RNAz p=0.955963 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 801-1054, - strand, RNAz p=0.966386 | |
| 802-899, + strand, RNAz p=0.955963 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_021188, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 100-241, gnl|bosTau2|chr10 (60510531-60510672) | |
| 100-241, gnl|canFam2|chr8 (50192499-50192666) | |
| 100-241, gnl|dasNov1|scaffold_270985 (1256-1089) | |
| 100-241, gnl|echTel1|scaffold_170085 (8362-8527) | |
| 100-241, gnl|galGal2|chr5 (34549609-34549776) | |
| 100-241, gnl|hg17|chr14 (73458518-73458685) | |
| 100-241, gnl|Hg17|chr14 (73458521-73458662) | |
| 100-241, gnl|loxAfr1|scaffold_140234 (2704-2870) | |
| 100-241, gnl|mm7|chr12 (82338606-82338773) | |
| 100-241, gnl|Mm7|chr12 (82338609-82338750) | |
| 100-241, gnl|monDom2|scaffold_8 (61033003-61032836) | |
| 100-241, gnl|oryCun1|scaffold_187834 (66584-66751) | |
| 100-241, gnl|panTro1|chr15 (73236560-73236727) | |
| 100-241, gnl|rheMac2|chr7 (137017050-137017217) | |
| 100-241, gnl|rn3|chr6 (108406418-108406582) | |
| 368-1054, gnl|bosTau2|chr10 (60516763-60517456) | |
| 368-1054, gnl|canFam2|chr8 (50199821-50200428) | |
| 368-1054, gnl|dasNov1|scaffold_5010 (2983-3576) | |
| 368-1054, gnl|echTel1|scaffold_66464 (2648-2064) | |
| 368-1054, gnl|hg17|chr14 (73467958-73468552) | |
| 368-1054, gnl|Hg17|chr14 (73467957-73468657) | |
| 368-1054, gnl|loxAfr1|scaffold_433 (176255-176855) | |
| 368-1054, gnl|mm7|chr12 (82342962-82343506) | |
| 368-1054, gnl|Mm7|chr12 (82342961-82343617) | |
| 368-1054, gnl|monDom2|scaffold_8 (61028926-61028332) | |
| 368-1054, gnl|oryCun1|scaffold_187834 (70589-71181) | |
| 368-1054, gnl|panTro1|chr15 (73246319-73246913) | |
| 368-1054, gnl|rheMac2|chr7 (137024163-137024755) | |
| 368-1054, gnl|rn3|chr6 (108409730-108410317) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 100-241, gnl|bosTau2|chr10 (60510531-60510672) | |
| 100-241, gnl|canFam2|chr8 (50192499-50192666) | |
| 100-241, gnl|dasNov1|scaffold_270985 (1256-1089) | |
| 100-241, gnl|echTel1|scaffold_170085 (8362-8527) | |
| 100-241, gnl|galGal2|chr5 (34549609-34549776) | |
| 100-241, gnl|hg17|chr14 (73458518-73458685) | |
| 100-241, gnl|Hg17|chr14 (73458521-73458662) | |
| 100-241, gnl|loxAfr1|scaffold_140234 (2704-2870) | |
| 100-241, gnl|mm7|chr12 (82338606-82338773) | |
| 100-241, gnl|Mm7|chr12 (82338609-82338750) | |
| 100-241, gnl|monDom2|scaffold_8 (61033003-61032836) | |
| 100-241, gnl|oryCun1|scaffold_187834 (66584-66751) | |
| 100-241, gnl|panTro1|chr15 (73236560-73236727) | |
| 100-241, gnl|rheMac2|chr7 (137017050-137017217) | |
| 100-241, gnl|rn3|chr6 (108406418-108406582) | |
| 368-1054, gnl|bosTau2|chr10 (60516763-60517456) | |
| 368-1054, gnl|canFam2|chr8 (50199821-50200428) | |
| 368-1054, gnl|dasNov1|scaffold_5010 (2983-3576) | |
| 368-1054, gnl|echTel1|scaffold_66464 (2648-2064) | |
| 368-1054, gnl|hg17|chr14 (73467958-73468552) | |
| 368-1054, gnl|Hg17|chr14 (73467957-73468657) | |
| 368-1054, gnl|loxAfr1|scaffold_433 (176255-176855) | |
| 368-1054, gnl|mm7|chr12 (82342962-82343506) | |
| 368-1054, gnl|Mm7|chr12 (82342961-82343617) | |
| 368-1054, gnl|monDom2|scaffold_8 (61028926-61028332) | |
| 368-1054, gnl|oryCun1|scaffold_187834 (70589-71181) | |
| 368-1054, gnl|panTro1|chr15 (73246319-73246913) | |
| 368-1054, gnl|rheMac2|chr7 (137024163-137024755) | |
| 368-1054, gnl|rn3|chr6 (108409730-108410317) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.142714) | |
| ebs (0.118301) | |
| jca (0.11396) |