Non-Coding RNA Search

Ss1.1-Mixn-0037i19.5

Sequence:


               
               GCCTTTTGCACATTATGTAGAGACTGAAGCCCAAAGACGAGTTAAATTCAGTGCTGTATT
GAAACCAGTTAGGGCAAAAAAGTTTATTCCTGTAAATTTTTCATTGTTAACATCAGGTGG
TAGTTGTGAAAACAGATACCACTCTTTCCAGTGTTCTGTGTGGTTCTTAGTGTGCTTCCT
CTTGACACTGATGGGTCCTTAATGCTTGGTTTTGGTTTCTCAGTTAAAATTAGAGCCTGT
CCTTCCTCCAGAAAGGGTGGAGCTACATATACGTGGCTGACCGATACTAGGTAAGAATAC
CTAGTTTTCCTAAAGCAAGCATTCAGTTGAAATCCAAATTGATCTGCGAAAACAAGACTG
ACAGTTTCCAAGTAACATCTTCAACCCGATCCTGAACTGCACAGAAGCACGATGGGATAG
TGACTGGTTTCAACGGTGCTATTTTAGGTTCTCCTGATTTTCATGAGCTGTGTTTGGAAA
TGGGATACTGTATAAAATGTGGATCATTTTGTTACCAATATTGCTATTTTAATTTGGTGT
TACAATTGGCGCACCTGCTTCTCACAGCTGCCCTTTGAGAAGAAGTACACGTGTTACCAG
CCTGCCTCCACTCAGGCTCTTGCTGTAGCATCATTTTTCCAGGTGATGATGTGCAGTTTT
AAACTACATGTACTATTATACTGCTCTTTCCCACAGACTCTTGTAATGTTTTCAGAACCT
AAAATGACAGCAAAAGAGCCAAGCAGGAGCATTTGAGTTTCTTTTGTAAAATGTAAAATG
ACTAAATTTAGACTGTCTCTCCTTGTACAGTTTTAAAAATAAATACCTCAGTGCTGTTTT
CCAGGATCCCCTGCGTTTCTCAAAATAATACCTGCTTCGTGTGGTACATAACTTGTAAGA
ACCACATTATTTTGGATTTTGAAGAATATTAAATATTTTAAAATCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTTTGCACATTATGTAGAGACTGAAGCCCAAAGACGAGTTAAATTCAGTGCTGTATT
GAAACCAGTTAGGGCAAAAAAGTTTATTCCTGTAAATTTTTCATTGTTAACATCAGGTGG
TAGTTGTGAAAACAGATACCACTCTTTCCAGTGTTCTGTGTGGTTCTTAGTGTGCTTCCT
CTTGACACTGATGGGTCCTTAATGCTTGGTTTTGGTTTCTCAGTTAAAATTAGAGCCTGT
CCTTCCTCCAGAAAGGGTGGAGCTACATATACGTGGCTGACCGATACTAGGTAAGAATAC
CTAGTTTTCCTAAAGCAAGCATTCAGTTGAAATCCAAATTGATCTGCGAAAACAAGACTG
ACAGTTTCCAAGTAACATCTTCAACCCGATCCTGAACTGCACAGAAGCACGATGGGATAG
TGACTGGTTTCAACGGTGCTATTTTAGGTTCTCCTGATTTTCATGAGCTGTGTTTGGAAA
TGGGATACTGTATAAAATGTGGATCATTTTGTTACCAATATTGCTATTTTAATTTGGTGT
TACAATTGGCGCACCTGCTTCTCACAGCTGCCCTTTGAGAAGAAGTACACGTGTTACCAG
CCTGCCTCCACTCAGGCTCTTGCTGTAGCATCATTTTTCCAGGTGATGATGTGCAGTTTT
AAACTACATGTACTATTATACTGCTCTTTCCCACAGACTCTTGTAATGTTTTCAGAACCT
AAAATGACAGCAAAAGAGCCAAGCAGGAGCATTTGAGTTTCTTTTGTAAAATGTAAAATG
ACTAAATTTAGACTGTCTCTCCTTGTACAGTTTTAAAAATAAATACCTCAGTGCTGTTTT
CCAGGATCCCCTGCGTTTCTCAAAATAATACCTGCTTCGTGTGGTACATAACTTGTAAGA
ACCACATTATTTTGGATTTTGAAGAATATTAAATATTTTAAAATCACC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               6-947, gnl|bosTau2|chr6 (39120149-39121100)
               

               
               6-947, gnl|Hg17|chr4 (56135973-56135004)
               

               
               6-947, gnl|Mm7|chr5 (76143087-76142196)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-947, gnl|bosTau2|chr6 (39120149-39121100)
               

               
               6-947, gnl|Hg17|chr4 (56135973-56135004)
               

               
               6-947, gnl|Mm7|chr5 (76143087-76142196)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               sag (0.182715)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	6-947, gnl\|bosTau2\|chr6 (39120149-39121100)
	6-947, gnl\|Hg17\|chr4 (56135973-56135004)
	6-947, gnl\|Mm7\|chr5 (76143087-76142196)

	sag (0.182715)
	lun (0.150489)
	ski (0.146735)
	sug (0.127291)
	ebs (0.118301)
	spc (0.113366)