Non-Coding RNA Search

Ss1.1-Mixn-0037j08.5

Sequence:


               
               GTCCCCAGTACACCCATGTCAACGAGGTCTGGCCCAAGCTCTACATTGGTGATGAGGCGA
CTGCGCTGGACCGCTACGGGCTGCAGAAGGCAGGCTTCACGCATGTGCTGAACGCTGCCC
ATGGCCGCTGGAACGTGGACACCGGACCCGATTACTACCGAGACATGGCCATCGAGTACC
ACGGCGTCGAGGCCGATGACCTGCCTACCTTTGACCTTAGCATCTTCTTCTACCCAGCGG
CCGCTTTCATCGATGCTGCGCTCCGCTATGAACACAATAAGATCCTGGTGCACTGCGCTA
TGGGCCGCAGCCGGTCGGCGACTCTGGTCCTGGCCTACCTGATGATCCACAGGAACATGA
CCCTGGTGGATGCCATCCGGCAAGTGGCCAAGAACCGCTGTGTCCTTCCCAACCGGGGCT
TCCTGAAGCAGCTCCGGGAGCTGGACAAGCAGCTGGTGCAGCAGCGGCGACGCGCCCAGC
ACGGGGGCGAGGCCGGGGAGAAGGCTGGTGAGAAGGAGCCATAGCGCCCCCTCCGGGGCG
AGCGGGACGCTGGGGAATGGAGGGCTAAGGCTGGCAAGAACTCTGGCCTGTGACTTTGTC
ACGGAGAAGGGTCGCGAAGCCGAAGCTCGACGCCTCGCAAACGATCGTAGGACTTCCAGG
GTGCGTGCTGGTGAGCAGGGGAGATCACAGTGGCCTCCGGGACGAGTCCAGCCCTGGGCT
TCACAGCCAAATGGGGAAGACGGGCTTCCCAGCAGAAGTGGTTACAGATGAGCTCACCAA
TCTGCACAAAGGCGCCGTTTTGTTTTGCTCCTTTTTTTCCTTTTTTTCTTTTTTTGGGTA
AGATGGAAGCAGAAAAGGATTTAAAACTGTGTAGACATTGTGCTGTGATTAAACATTGGC
TTTGTCTGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCCAGTACACCCATGTCAACGAGGTCTGGCCCAAGCTCTACATTGGTGATGAGGCGA
CTGCGCTGGACCGCTACGGGCTGCAGAAGGCAGGCTTCACGCATGTGCTGAACGCTGCCC
ATGGCCGCTGGAACGTGGACACCGGACCCGATTACTACCGAGACATGGCCATCGAGTACC
ACGGCGTCGAGGCCGATGACCTGCCTACCTTTGACCTTAGCATCTTCTTCTACCCAGCGG
CCGCTTTCATCGATGCTGCGCTCCGCTATGAACACAATAAGATCCTGGTGCACTGCGCTA
TGGGCCGCAGCCGGTCGGCGACTCTGGTCCTGGCCTACCTGATGATCCACAGGAACATGA
CCCTGGTGGATGCCATCCGGCAAGTGGCCAAGAACCGCTGTGTCCTTCCCAACCGGGGCT
TCCTGAAGCAGCTCCGGGAGCTGGACAAGCAGCTGGTGCAGCAGCGGCGACGCGCCCAGC
ACGGGGGCGAGGCCGGGGAGAAGGCTGGTGAGAAGGAGCCATAGCGCCCCCTCCGGGGCG
AGCGGGACGCTGGGGAATGGAGGGCTAAGGCTGGCAAGAACTCTGGCCTGTGACTTTGTC
ACGGAGAAGGGTCGCGAAGCCGAAGCTCGACGCCTCGCAAACGATCGTAGGACTTCCAGG
GTGCGTGCTGGTGAGCAGGGGAGATCACAGTGGCCTCCGGGACGAGTCCAGCCCTGGGCT
TCACAGCCAAATGGGGAAGACGGGCTTCCCAGCAGAAGTGGTTACAGATGAGCTCACCAA
TCTGCACAAAGGCGCCGTTTTGTTTTGCTCCTTTTTTTCCTTTTTTTCTTTTTTTGGGTA
AGATGGAAGCAGAAAAGGATTTAAAACTGTGTAGACATTGTGCTGTGATTAAACATTGGC
TTTGTCTGAAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|33243897|gb|AAQ01518.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33243897|gb|AAQ01518.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               277-773, gnl|bosTau2|chr28 (24090574-24091066)
               

               
               277-773, gnl|Hg17|chr10 (76467841-76467355)
               

               
               277-773, gnl|Mm7|chr14 (19335833-19335404)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               277-773, gnl|bosTau2|chr28 (24090574-24091066)
               

               
               277-773, gnl|Hg17|chr10 (76467841-76467355)
               

               
               277-773, gnl|Mm7|chr14 (19335833-19335404)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mas (0.210305)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)

	277-773, gnl\|bosTau2\|chr28 (24090574-24091066)
	277-773, gnl\|Hg17\|chr10 (76467841-76467355)
	277-773, gnl\|Mm7\|chr14 (19335833-19335404)