Non-Coding RNA Search

Ss1.1-Mixn-0037k13.5

Sequence:


               
               TAGGCGGCCGCCTCGGGGCTGGAGAGCCCACCCTCCTCCTGGAAGATGGAGGTCAGGGCG
TCCGACACGCCGGCCGGCATGTACTTGGCGTTGCCCGCCAGGTAGAAGTGGGCGCCCCGG
CGCTCCAGCAGCTCCCACACCAGTGGCCCCTGCTCGCGGATCCGGTGCTGCACGTATACC
TTCTGCTCCTGCTCCCGGGAGAAGGCTGTGATGAGAGTCAGGCAGCCCCGCTCCTGCAGC
TCCTTCCACTCTGCCTCCCAGTAGAAGTCCTGGTCCCGCTGGCGGCAGCCGAAAAACAAG
ACGTTTCCAATCTGACCCCGGGCCACGCGCTCCTGGATGGCTGCTCGGAAGGGGGCCACG
CCCGTGCCAGGCCCCACCAGGATCACGGGCGTGTCTCGTGTCTCTGGGAACTTCAGGCCC
CCGGAACGCACCCACAGGGGCACCTGGACAGGTCCTTGCCCGGGGTCCAGAGACGCCAGC
CAGGAGGAGCAGAGGCCCCGGCGGGGCTCCTTGAGGCGTGTCCGGTACTGCACCACGGCC
ACGAGGATCTGCAGCCTCTCAGGGTGAGCCAGCAGGGAGGACGCGATGGAGAAGGCCCGC
GGCCGGATCGGGGGGATGAGGTCGAACAGGTAGGCCGGGGGCACGGCGCTGGCCGTGTGT
GGGAAGTCGCACAGCACCTCCAGGATGGTCCTGCGGGGCCGCGTGCAGTACTCGCACAGC
TCCTCCTGGCCTCGGGCAGAGCTGAGCTCCAGCAGCTTCTCCCGCTCCAGCTCGTGCGGG
GAGAGGCAGGCCAGGAGCTCAAAGAAGGAGCGGCGGGGCACGCTGGAGATATCCAGATAC
TGGGACACGAGGCGCCGCACGGAGCAGGGCTGGGGCAGCCGCTCTGGGCAAGGGACACCT
GCCGCAGGGGATGGGAGGCTGTGGGGGCCAGGGACTGGGGCGGCAGGGGAGAGGGCAGCA
CGAGGGGGGCCCCACCCTGGGCTTGGGGACTCACCTGGCTCCTGGGGCTGCAGCATGAAG
TGCTGGTCGGGGTCCAGGCCCAGCAGCTGGCAGAACTGCTGGACGCGGCTGGCCGCGTTC
TCGGGCTGGATCAGCACCACGTCGCCTGCTGCAAAGCTGATCCCGGAGCCCGAGATGTCA
AACTCAATCAGGCGGACATCCTGAAAGTGTGAGGGGCCGGTGACCCTCTGGTTGGTGACC
ATGGGTGCCAGGAAGGGCTGCAGCTCTGAAGGCGGTCCCTGAGGGTCTGTCCCGGCCACG
CTCAGCTCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGCGGCCGCCTCGGGGCTGGAGAGCCCACCCTCCTCCTGGAAGATGGAGGTCAGGGCG
TCCGACACGCCGGCCGGCATGTACTTGGCGTTGCCCGCCAGGTAGAAGTGGGCGCCCCGG
CGCTCCAGCAGCTCCCACACCAGTGGCCCCTGCTCGCGGATCCGGTGCTGCACGTATACC
TTCTGCTCCTGCTCCCGGGAGAAGGCTGTGATGAGAGTCAGGCAGCCCCGCTCCTGCAGC
TCCTTCCACTCTGCCTCCCAGTAGAAGTCCTGGTCCCGCTGGCGGCAGCCGAAAAACAAG
ACGTTTCCAATCTGACCCCGGGCCACGCGCTCCTGGATGGCTGCTCGGAAGGGGGCCACG
CCCGTGCCAGGCCCCACCAGGATCACGGGCGTGTCTCGTGTCTCTGGGAACTTCAGGCCC
CCGGAACGCACCCACAGGGGCACCTGGACAGGTCCTTGCCCGGGGTCCAGAGACGCCAGC
CAGGAGGAGCAGAGGCCCCGGCGGGGCTCCTTGAGGCGTGTCCGGTACTGCACCACGGCC
ACGAGGATCTGCAGCCTCTCAGGGTGAGCCAGCAGGGAGGACGCGATGGAGAAGGCCCGC
GGCCGGATCGGGGGGATGAGGTCGAACAGGTAGGCCGGGGGCACGGCGCTGGCCGTGTGT
GGGAAGTCGCACAGCACCTCCAGGATGGTCCTGCGGGGCCGCGTGCAGTACTCGCACAGC
TCCTCCTGGCCTCGGGCAGAGCTGAGCTCCAGCAGCTTCTCCCGCTCCAGCTCGTGCGGG
GAGAGGCAGGCCAGGAGCTCAAAGAAGGAGCGGCGGGGCACGCTGGAGATATCCAGATAC
TGGGACACGAGGCGCCGCACGGAGCAGGGCTGGGGCAGCCGCTCTGGGCAAGGGACACCT
GCCGCAGGGGATGGGAGGCTGTGGGGGCCAGGGACTGGGGCGGCAGGGGAGAGGGCAGCA
CGAGGGGGGCCCCACCCTGGGCTTGGGGACTCACCTGGCTCCTGGGGCTGCAGCATGAAG
TGCTGGTCGGGGTCCAGGCCCAGCAGCTGGCAGAACTGCTGGACGCGGCTGGCCGCGTTC
TCGGGCTGGATCAGCACCACGTCGCCTGCTGCAAAGCTGATCCCGGAGCCCGAGATGTCA
AACTCAATCAGGCGGACATCCTGAAAGTGTGAGGGGCCGGTGACCCTCTGGTTGGTGACC
ATGGGTGCCAGGAAGGGCTGCAGCTCTGAAGGCGGTCCCTGAGGGTCTGTCCCGGCCACG
CTCAGCTCCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62740139|gb|AAH93782.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62740139|gb|AAH93782.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               188-308, gnl|bosTau2|chr11 (85469003-85469123)
               

               
               188-308, gnl|Hg17|chr9 (137386307-137386187)
               

               
               188-308, gnl|Mm7|chr2 (25255432-25255552)
               


               
               311-456, gnl|bosTau2|chr11 (85469217-85469362)
               

               
               311-456, gnl|Hg17|chr9 (137386091-137385946)
               

               
               311-456, gnl|Mm7|chr2 (25255650-25255795)
               


               
               676-1119, gnl|bosTau2|chr11 (85470326-85470774)
               

               
               676-1119, gnl|Hg17|chr9 (137385309-137384856)
               

               
               676-1119, gnl|Mm7|chr2 (25256409-25256840)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               188-308, gnl|bosTau2|chr11 (85469003-85469123)
               

               
               188-308, gnl|Hg17|chr9 (137386307-137386187)
               

               
               188-308, gnl|Mm7|chr2 (25255432-25255552)
               


               
               311-456, gnl|bosTau2|chr11 (85469217-85469362)
               

               
               311-456, gnl|Hg17|chr9 (137386091-137385946)
               

               
               311-456, gnl|Mm7|chr2 (25255650-25255795)
               


               
               676-1119, gnl|bosTau2|chr11 (85470326-85470774)
               

               
               676-1119, gnl|Hg17|chr9 (137385309-137384856)
               

               
               676-1119, gnl|Mm7|chr2 (25256409-25256840)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               med (0.116252)

	188-308, gnl\|bosTau2\|chr11 (85469003-85469123)
	188-308, gnl\|Hg17\|chr9 (137386307-137386187)
	188-308, gnl\|Mm7\|chr2 (25255432-25255552)

	311-456, gnl\|bosTau2\|chr11 (85469217-85469362)
	311-456, gnl\|Hg17\|chr9 (137386091-137385946)
	311-456, gnl\|Mm7\|chr2 (25255650-25255795)

	676-1119, gnl\|bosTau2\|chr11 (85470326-85470774)
	676-1119, gnl\|Hg17\|chr9 (137385309-137384856)
	676-1119, gnl\|Mm7\|chr2 (25256409-25256840)