Non-Coding RNA Search

Ss1.1-Mixn-0037l09.5

Sequence:


               
               CCCACCTTTGACTCTCTCACTCCAGAATGCAGAAGCCTGTCTCTATATATCTAATCGACA
GCAAATCAAACCTTGTCATCCACCTCTGATGGCATTTTTTTTGGGAGAAGGGATGTCCAC
ATACAGTTTTTGAAATATTTTCTCTCCAAACCAATTAGCTAGAGCCAGTGACCCCCTGTG
CCCTGGGGGAAGAATCTGCCTTGTCTAGGTTTGTGCTTCCAGCCACGTCCCCCTCCCTCG
GCCCTTCTTGCATTGCCCATTCGCTAGTCCTTTTCCCAAAGAGTATTCTGTCGAGGACCC
CATTTCAAAGCCTGTGCCTTTCCCATGGCGGTGCCTCCAGGGAAACATGTTTCTTTGTAT
ATAGCCCTCTTGCTGGCTCTGCATCAAAAGTGCTGTGGTCTTGGTGTTGGCCCAATAAAC
TTCATTTGCAATTCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCTTTGACTCTCTCACTCCAGAATGCAGAAGCCTGTCTCTATATATCTAATCGACA
GCAAATCAAACCTTGTCATCCACCTCTGATGGCATTTTTTTTGGGAGAAGGGATGTCCAC
ATACAGTTTTTGAAATATTTTCTCTCCAAACCAATTAGCTAGAGCCAGTGACCCCCTGTG
CCCTGGGGGAAGAATCTGCCTTGTCTAGGTTTGTGCTTCCAGCCACGTCCCCCTCCCTCG
GCCCTTCTTGCATTGCCCATTCGCTAGTCCTTTTCCCAAAGAGTATTCTGTCGAGGACCC
CATTTCAAAGCCTGTGCCTTTCCCATGGCGGTGCCTCCAGGGAAACATGTTTCTTTGTAT
ATAGCCCTCTTGCTGGCTCTGCATCAAAAGTGCTGTGGTCTTGGTGTTGGCCCAATAAAC
TTCATTTGCAATTCAAAAAAAAAA

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               149-435, gnl|bosTau2|chr5 (20129503-20129218)
               

               
               149-435, gnl|canFam2|chr27 (5458574-5458222)
               

               
               149-435, gnl|hg17|chr12 (51324567-51324918)
               

               
               149-435, gnl|Hg17|chr12 (51324896-51324609)
               

               
               149-435, gnl|mm7|chr15 (101796804-101797142)
               

               
               149-435, gnl|Mm7|chr15 (101797124-101796846)
               

               
               149-435, gnl|oryCun1|scaffold_176185 (43508-43854)
               

               
               149-435, gnl|panTro1|chr10 (52549455-52549806)
               

               
               149-435, gnl|rheMac2|chr11 (49715699-49716051)
               

               
               149-435, gnl|rn3|chr7 (140576883-140577220)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               149-435, gnl|bosTau2|chr5 (20129503-20129218)
               

               
               149-435, gnl|canFam2|chr27 (5458574-5458222)
               

               
               149-435, gnl|hg17|chr12 (51324567-51324918)
               

               
               149-435, gnl|Hg17|chr12 (51324896-51324609)
               

               
               149-435, gnl|mm7|chr15 (101796804-101797142)
               

               
               149-435, gnl|Mm7|chr15 (101797124-101796846)
               

               
               149-435, gnl|oryCun1|scaffold_176185 (43508-43854)
               

               
               149-435, gnl|panTro1|chr10 (52549455-52549806)
               

               
               149-435, gnl|rheMac2|chr11 (49715699-49716051)
               

               
               149-435, gnl|rn3|chr7 (140576883-140577220)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.422238)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.422238)

	149-435, gnl\|bosTau2\|chr5 (20129503-20129218)
	149-435, gnl\|canFam2\|chr27 (5458574-5458222)
	149-435, gnl\|hg17\|chr12 (51324567-51324918)
	149-435, gnl\|Hg17\|chr12 (51324896-51324609)
	149-435, gnl\|mm7\|chr15 (101796804-101797142)
	149-435, gnl\|Mm7\|chr15 (101797124-101796846)
	149-435, gnl\|oryCun1\|scaffold_176185 (43508-43854)
	149-435, gnl\|panTro1\|chr10 (52549455-52549806)
	149-435, gnl\|rheMac2\|chr11 (49715699-49716051)
	149-435, gnl\|rn3\|chr7 (140576883-140577220)