Non-Coding RNA Search

Ss1.1-Mixn-0037l12.5

Sequence:


               
               CCTGCCCTCACGATGAAGCCCAGCAGCCTTTTCATCTTCCTGGTGATATTTGCCTCTGGA
TTCCTGACGTCCTGGGCTGTGAAAGGGGCTGGCGAAGAGGAGTCGGAGTCTTTAAAGCCA
CGTCCAGGAAAAACTAAACGTGGATCCTGCCCCTTCATACGCCCTGCAATGTGCCTGGTA
TATGAACCCCCTGAATGCCAGAATGACTGGCAGTGTCCAAAGAGGAAAAAATGCTGCCGT
GACACTTGTGGCATCAAATGCTTGGATCCTGTAAACCCATCAAAGTCAGTTAAGATCAAT
CCTGGGAAGTGTCCAGTGGTCACTGGCCAGTGTAAGATGCTCAACCCCATAGACCACTGC
CAGAATGACAGCAACTGCCTGAATGGTCTCAAGTGCTGCAAGGGTATATGTGGGAACATA
TGTGTCCAGCCGGTAAAAGATGTATCCTTGCCAGTTCAATAAGGTTAGGACTTTCCGGTC
CATGTGGTCTGGGGATTTCTTTTTTCCCCAAGCCTGAAAAAAATGAAAACACCTTGGTGA
AGATGTGGCTTTGTGACCTATACTTCGTTGGGGGCCAAGTTTTGGATATTTTACCTGTGT
ATTCCCAGTATCCAACGTGAAGTTTGGTACATGGCAGGAAATGTCTGTTGATTGGCAAAT
AAATAAATGCTCAAGGTTTTCTCTGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCCTCACGATGAAGCCCAGCAGCCTTTTCATCTTCCTGGTGATATTTGCCTCTGGA
TTCCTGACGTCCTGGGCTGTGAAAGGGGCTGGCGAAGAGGAGTCGGAGTCTTTAAAGCCA
CGTCCAGGAAAAACTAAACGTGGATCCTGCCCCTTCATACGCCCTGCAATGTGCCTGGTA
TATGAACCCCCTGAATGCCAGAATGACTGGCAGTGTCCAAAGAGGAAAAAATGCTGCCGT
GACACTTGTGGCATCAAATGCTTGGATCCTGTAAACCCATCAAAGTCAGTTAAGATCAAT
CCTGGGAAGTGTCCAGTGGTCACTGGCCAGTGTAAGATGCTCAACCCCATAGACCACTGC
CAGAATGACAGCAACTGCCTGAATGGTCTCAAGTGCTGCAAGGGTATATGTGGGAACATA
TGTGTCCAGCCGGTAAAAGATGTATCCTTGCCAGTTCAATAAGGTTAGGACTTTCCGGTC
CATGTGGTCTGGGGATTTCTTTTTTCCCCAAGCCTGAAAAAAATGAAAACACCTTGGTGA
AGATGTGGCTTTGTGACCTATACTTCGTTGGGGGCCAAGTTTTGGATATTTTACCTGTGT
ATTCCCAGTATCCAACGTGAAGTTTGGTACATGGCAGGAAATGTCTGTTGATTGGCAAAT
AAATAAATGCTCAAGGTTTTCTCTGAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61826879|ref|XP_590087.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826879|ref|XP_590087.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               125-294, gnl|bosTau2|chr13 (55587397-55587228)
               

               
               125-294, gnl|Hg17|chr20 (43315794-43315625)
               

               
               125-294, gnl|Mm7|chr2 (164096505-164096336)
               


               
               438-685, gnl|bosTau2|chr13 (55585920-55585664)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-294, gnl|bosTau2|chr13 (55587397-55587228)
               

               
               125-294, gnl|Hg17|chr20 (43315794-43315625)
               

               
               125-294, gnl|Mm7|chr2 (164096505-164096336)
               


               
               438-685, gnl|bosTau2|chr13 (55585920-55585664)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               csk (2.95567)
               

               
               nco (2.10254)
               

               
               nep (0.919625)
               

               
               ton (0.702001)
               

               
               nbm (0.695272)
               

               
               col (0.585023)
               

               
               pla (0.534688)
               

               
               cbl (0.344392)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (2.95567)
               

               
               nco (2.10254)
               

               
               nep (0.919625)
               

               
               ton (0.702001)
               

               
               nbm (0.695272)
               

               
               col (0.585023)
               

               
               pla (0.534688)
               

               
               cbl (0.344392)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)

	125-294, gnl\|bosTau2\|chr13 (55587397-55587228)
	125-294, gnl\|Hg17\|chr20 (43315794-43315625)
	125-294, gnl\|Mm7\|chr2 (164096505-164096336)

	438-685, gnl\|bosTau2\|chr13 (55585920-55585664)

	csk (2.95567)
	nco (2.10254)
	nep (0.919625)
	ton (0.702001)
	nbm (0.695272)
	col (0.585023)
	pla (0.534688)
	cbl (0.344392)
	nlu (0.191681)
	rec (0.17307)
	cut (0.169924)
	ski (0.146735)
	hyp (0.142837)
	thg (0.126791)