Non-Coding RNA Search

Ss1.1-Mixn-0038a14.5

Sequence:


               
               GAGTGTGGCGACTGCGGGGCCCTGGTAGGTGGAGCGGGCGGTGGCCGCGTAGGTGTGCGC
TAGGCCCGGAGAGCGTTGGCGTTGTGTGGGCCTCGGCATGGGCCTCTTGAGTGGGGCGGC
TCGCGCTCTGGTGCGGGGCGCCGACCGGATGAGCAAGTGGACCAGCAAGCGGGGCCCGCG
CACCTTCTGCAAGGGCCGTGGCGCCAAGGGCACCGGCTTCCACGGCCGCGACGGGAAGTT
CGTGCAGATCAAGGAAATGATCCCAGAGCTGGTGGTTCCCGAGCTGGCCGGCTTCAAGCT
CAAGCCCTACGTAAACTACCGCGCCCCAGAAGGCACAGACACTCCCCTGACGGCCAAGCA
GCTCTTTCTAGAAACGGCGGCGCCGGCCATCGAGAAGGACTTTAAGGCCGGGACTTTCGA
CCCTGAGCACCTGGAAAAGTATGGCTTTGAGCCCACGCAGGAAGGCAAGCTCTTCCAACT
TTACCCCAAGAACTTCCCGCGCTAGGAGCGGACGAACAGCGGAGGCAGGGTGTGCCTGGG
ACTGAGCACTTGGACCGGACCGACCCTCTTTGTTGACCCTAGCCTCGGGGTGGCGGGTCG
GGAGGCCTGTCCCTCGTGCCATTTCTATTAAAGACTTTAGCTGTTCTGAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGTGGCGACTGCGGGGCCCTGGTAGGTGGAGCGGGCGGTGGCCGCGTAGGTGTGCGC
TAGGCCCGGAGAGCGTTGGCGTTGTGTGGGCCTCGGCATGGGCCTCTTGAGTGGGGCGGC
TCGCGCTCTGGTGCGGGGCGCCGACCGGATGAGCAAGTGGACCAGCAAGCGGGGCCCGCG
CACCTTCTGCAAGGGCCGTGGCGCCAAGGGCACCGGCTTCCACGGCCGCGACGGGAAGTT
CGTGCAGATCAAGGAAATGATCCCAGAGCTGGTGGTTCCCGAGCTGGCCGGCTTCAAGCT
CAAGCCCTACGTAAACTACCGCGCCCCAGAAGGCACAGACACTCCCCTGACGGCCAAGCA
GCTCTTTCTAGAAACGGCGGCGCCGGCCATCGAGAAGGACTTTAAGGCCGGGACTTTCGA
CCCTGAGCACCTGGAAAAGTATGGCTTTGAGCCCACGCAGGAAGGCAAGCTCTTCCAACT
TTACCCCAAGAACTTCCCGCGCTAGGAGCGGACGAACAGCGGAGGCAGGGTGTGCCTGGG
ACTGAGCACTTGGACCGGACCGACCCTCTTTGTTGACCCTAGCCTCGGGGTGGCGGGTCG
GGAGGCCTGTCCCTCGTGCCATTTCTATTAAAGACTTTAGCTGTTCTGAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|21961173|gb|AAH34728.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|21961173|gb|AAH34728.1|

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               77-642, gnl|bosTau2|chr20 (38177054-38177609)
               

               
               77-642, gnl|Hg17|chr9 (137722325-137722839)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-642, gnl|bosTau2|chr20 (38177054-38177609)
               

               
               77-642, gnl|Hg17|chr9 (137722325-137722839)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               mas (1.05152)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (1.05152)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	77-642, gnl\|bosTau2\|chr20 (38177054-38177609)
	77-642, gnl\|Hg17\|chr9 (137722325-137722839)

	mas (1.05152)
	elu (0.385356)
	ill (0.351185)
	fhi (0.339155)
	pty (0.285429)
	fce (0.271592)
	nmm (0.265604)
	med (0.232504)
	nbm (0.198649)
	col (0.195008)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	cut (0.169924)
	nje (0.16592)
	csp (0.161186)
	cli (0.152812)
	eli (0.151814)
	nca (0.136874)
	ste (0.135208)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	pgl (0.118483)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)