Ss1.1-Mixn-0038a21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGTTGACCCGACCGGCGCCCCTCGGTCCCCGCGCCGCGCGCTCCCTTCCGCGTTCCG CCGTCGACCCCACCTGCGCCCCGGCCCGGCAACTGGGGCCAGCGCCATGGCCCGAGCGTC CGGGGCGCGGCGCTGACGGCGGCCAGCGGAGCGCGCCATGCCCAGCAGGACGGGCCCCAA GATGGACGGGAACGGCGACCGCGTCCGCCTGAAGGCGCACTACAGCGGGGACATCCTGAT CACCAGCCTGGACTCCGCCACCACCTTCGAGGAGCTCTGCGAGGAGGTGCGGGAAATGTG CTGTCTCAGCCGGGACCACCCGCTCACCCTCAAGTGGGTGGACAGCGAAGGTGACCCCTG CACCGTGTCCTCCCAGATGGAGCTGGAGGAGGCCTTCCGGCTGTCCAGTCAGCGCAGGGA CGAAGGGCTCATCATTCACGTGTTCCCCAGCATCCCTGAGGAGCCCGGCCTGCCCTGCCC CGGAGAAGACAAATCCATCTACCGCCGTGGGGCCAGAAGATGGAGGAAGCTGTACCGCGC CAACGGCCACCTCTTCCAGGCCAAGCGCTTTAACAGGGGAGCGTACTGCGGCCAGTGCAG CGAAAGGATATGGGGCCTCGCGAGGCAAGGCTACAGGTGCATCAGCTGCAGACTGCTGGT CCATAAGCGCTGCCACGGCCTCGTCCCGCTGACCTGCAAGAGGCATATGGATTCTGTCAT GCCTTCCCAGGAGCCTGCAGTAGACGACAGCAGTGACCGCGTGGACCTTCCGTCCGAGGA CACCGATGGAATTGCTTATATTTCTTCAACCCGGAAACACGACGGCATCAAAGATGATTC CGAGGACCTCAAGCCGGTCATCGACGGGATGGACGGAATCAAGATCTCGCAGGGGCTCGG GCTGCAGGACTTCGACCTGATCAGGGTCATCGGGCGCGGCAGCTACGCCAAGGTTCTGCT GGTGCGGCTGAAGAAGAGCGACCAGGTGTACGCCATGAAGGTGGTGAAGAAGGAGCTGGT CCACGACGACGAGGATATTGACTGGGTACAGACAGAGAAGCACGTGTTTGAGCAGGCGTC CAGCAACCCTTTCCTGGTCGGCTTACACTCCTGCTTCCAGACGACGAGTCGGTTGTTCCT GGTCATTGAGTACGTCAACGGGGGCGACCTCATGTTCCACATGCAGAGGCAGAGGAAGCT GCCGGAGGAGCATGCCAGATTCTACGCTGCTGAGATTTGCATCGCACTCAACTTCTTGCA CGAGAGAGGGATCATCTACCGCGACCTGAAGCTGGACAACGTGCTCCTGGACGCCGACGG CCACATCAAGCTGACGGACTACGGCATGTGCAAGGAGGGCCTGGGCCCCGGTGACACGAC CAGCACGTTCTGCGGGACCCCGAACTACATCGCCCCCGAGATCCTGCGCGGGGAGGAGTA CGGGTTCAGCGTGGACTGGTGGGCGCTGGGCGTCCTGATGTTTGAGATGATGGCCGGCCG CTCCCCCTTCGACATCATCACTGACAACCCGGACATGAACACCGAGGACTACCTTTTCCA AGTCATCCTGGAGAAGCCCATCCGGATCCCCCGGTTCCTCTCGGTCAAGGCCTCCCACGT CCTGAAAGGGTTCTTAAACAAGGACCCCAAGGAGAGGCTGGGCTGCCGGCCACAGACCGG GTTTTCCGACATCAAGTCTCACGCCTTCTTCCGCAGCATAGACTGGGACCTGCTGGGGAA GAAGCAGGCCCTCCCGCCCTTCCAGCCGCAGATCACCGACGACTACGGCCTGGACAACTT CGACACGCAGTTCACCAGCGAGCCGGTGCAGCTGACCCCGGATGACGAGGACGTCATCAA GAGGATCGACCAGTCAGAGTTCGAAGGGTTTGAGTACATCAACCCGCTGCTGCTGTCCAC CGAGGAGTCCGTGTGAGGCGGCCCTGGGCCCCGGGGCACCGCCGCCGGCGCCCCTGACTC TGCCCGTGACCACAGCGCATGCATGCCAGGCTGGGCCCGAGCCGGTCGCCCTCTCGTCCG GCTGCGCGGCCGCCGCGCGCTGGAGGAATTTGCTTCTCGTGCCTGCGCCGCGGAGACCCC GCGGTGACCGTGTCCAGGGAGAAACTGTCCCCCGATTTCGAAGGTGCACACTTTCCGCAG AACCAGAACGGACCTGCTCCGCCGGGAGAGGTAGCCTGTAATGTCCTGAGGAATAAAGTG TCCCGATGCTGAAAAAAAAAAAAATTGATGCCTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGTTGACCCGACCGGCGCCCCTCGGTCCCCGCGCCGCGCGCTCCCTTCCGCGTTCCG CCGTCGACCCCACCTGCGCCCCGGCCCGGCAACTGGGGCCAGCGCCATGGCCCGAGCGTC CGGGGCGCGGCGCTGACGGCGGCCAGCGGAGCGCGCCATGCCCAGCAGGACGGGCCCCAA GATGGACGGGAACGGCGACCGCGTCCGCCTGAAGGCGCACTACAGCGGGGACATCCTGAT CACCAGCCTGGACTCCGCCACCACCTTCGAGGAGCTCTGCGAGGAGGTGCGGGAAATGTG CTGTCTCAGCCGGGACCACCCGCTCACCCTCAAGTGGGTGGACAGCGAAGGTGACCCCTG CACCGTGTCCTCCCAGATGGAGCTGGAGGAGGCCTTCCGGCTGTCCAGTCAGCGCAGGGA CGAAGGGCTCATCATTCACGTGTTCCCCAGCATCCCTGAGGAGCCCGGCCTGCCCTGCCC CGGAGAAGACAAATCCATCTACCGCCGTGGGGCCAGAAGATGGAGGAAGCTGTACCGCGC CAACGGCCACCTCTTCCAGGCCAAGCGCTTTAACAGGGGAGCGTACTGCGGCCAGTGCAG CGAAAGGATATGGGGCCTCGCGAGGCAAGGCTACAGGTGCATCAGCTGCAGACTGCTGGT CCATAAGCGCTGCCACGGCCTCGTCCCGCTGACCTGCAAGAGGCATATGGATTCTGTCAT GCCTTCCCAGGAGCCTGCAGTAGACGACAGCAGTGACCGCGTGGACCTTCCGTCCGAGGA CACCGATGGAATTGCTTATATTTCTTCAACCCGGAAACACGACGGCATCAAAGATGATTC CGAGGACCTCAAGCCGGTCATCGACGGGATGGACGGAATCAAGATCTCGCAGGGGCTCGG GCTGCAGGACTTCGACCTGATCAGGGTCATCGGGCGCGGCAGCTACGCCAAGGTTCTGCT GGTGCGGCTGAAGAAGAGCGACCAGGTGTACGCCATGAAGGTGGTGAAGAAGGAGCTGGT CCACGACGACGAGGATATTGACTGGGTACAGACAGAGAAGCACGTGTTTGAGCAGGCGTC CAGCAACCCTTTCCTGGTCGGCTTACACTCCTGCTTCCAGACGACGAGTCGGTTGTTCCT GGTCATTGAGTACGTCAACGGGGGCGACCTCATGTTCCACATGCAGAGGCAGAGGAAGCT GCCGGAGGAGCATGCCAGATTCTACGCTGCTGAGATTTGCATCGCACTCAACTTCTTGCA CGAGAGAGGGATCATCTACCGCGACCTGAAGCTGGACAACGTGCTCCTGGACGCCGACGG CCACATCAAGCTGACGGACTACGGCATGTGCAAGGAGGGCCTGGGCCCCGGTGACACGAC CAGCACGTTCTGCGGGACCCCGAACTACATCGCCCCCGAGATCCTGCGCGGGGAGGAGTA CGGGTTCAGCGTGGACTGGTGGGCGCTGGGCGTCCTGATGTTTGAGATGATGGCCGGCCG CTCCCCCTTCGACATCATCACTGACAACCCGGACATGAACACCGAGGACTACCTTTTCCA AGTCATCCTGGAGAAGCCCATCCGGATCCCCCGGTTCCTCTCGGTCAAGGCCTCCCACGT CCTGAAAGGGTTCTTAAACAAGGACCCCAAGGAGAGGCTGGGCTGCCGGCCACAGACCGG GTTTTCCGACATCAAGTCTCACGCCTTCTTCCGCAGCATAGACTGGGACCTGCTGGGGAA GAAGCAGGCCCTCCCGCCCTTCCAGCCGCAGATCACCGACGACTACGGCCTGGACAACTT CGACACGCAGTTCACCAGCGAGCCGGTGCAGCTGACCCCGGATGACGAGGACGTCATCAA GAGGATCGACCAGTCAGAGTTCGAAGGGTTTGAGTACATCAACCCGCTGCTGCTGTCCAC CGAGGAGTCCGTGTGAGGCGGCCCTGGGCCCCGGGGCACCGCCGCCGGCGCCCCTGACTC TGCCCGTGACCACAGCGCATGCATGCCAGGCTGGGCCCGAGCCGGTCGCCCTCTCGTCCG GCTGCGCGGCCGCCGCGCGCTGGAGGAATTTGCTTCTCGTGCCTGCGCCGCGGAGACCCC GCGGTGACCGTGTCCAGGGAGAAACTGTCCCCCGATTTCGAAGGTGCACACTTTCCGCAG AACCAGAACGGACCTGCTCCGCCGGGAGAGGTAGCCTGTAATGTCCTGAGGAATAAAGTG TCCCGATGCTGAAAAAAAAAAAAATTGATGCCTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 13-229, gnl|bosTau2|chr16 (36803930-36803707) | |
| 13-229, gnl|Hg17|chr1 (2014103-2014303) | |
| 13-229, gnl|Mm7|chr4 (154350926-154350693) | |
| 579-710, gnl|bosTau2|chr16 (36725200-36725069) | |
| 579-710, gnl|canFam2|chr34 (37815224-37815412) | |
| 579-710, gnl|canFam2|chr5 (60087751-60087899) | |
| 579-710, gnl|danRer3|chr2 (35013926-35014073) | |
| 579-710, gnl|danRer3|chr2 (35013909-35014078) | |
| 579-710, gnl|echTel1|scaffold_314592 (90820-90689) | |
| 579-710, gnl|echTel1|scaffold_314592 (90849-90661) | |
| 579-710, gnl|fr1|chrUn (18483743-18483593) | |
| 579-710, gnl|fr1|chrUn (18483793-18483589) | |
| 579-710, gnl|galGal2|chr21 (1715645-1715505) | |
| 579-710, gnl|galGal2|chr9 (19297724-19297554) | |
| 579-710, gnl|hg17|chr1 (2107809-2107966) | |
| 579-710, gnl|Hg17|chr1 (2107812-2107943) | |
| 579-710, gnl|hg17|chr3 (171470880-171471068) | |
| 579-710, gnl|loxAfr1|scaffold_164727 (4761-4912) | |
| 579-710, gnl|loxAfr1|scaffold_47197 (1459-1647) | |
| 579-710, gnl|mm7|chr3 (30843060-30843247) | |
| 579-710, gnl|mm7|chr4 (154283944-154283801) | |
| 579-710, gnl|Mm7|chr4 (154283939-154283808) | |
| 579-710, gnl|monDom2|scaffold_239 (479039-478881) | |
| 579-710, gnl|monDom2|scaffold_52 (1828546-1828358) | |
| 579-710, gnl|oryCun1|scaffold_203571 (141767-141902) | |
| 579-710, gnl|oryCun1|scaffold_212926 (1614-1802) | |
| 579-710, gnl|panTro1|chr2 (174962943-174963131) | |
| 579-710, gnl|rheMac2|chr1 (5196330-5196487) | |
| 579-710, gnl|rheMac2|chr2 (116738982-116738788) | |
| 579-710, gnl|rn3|chr2 (116705608-116705420) | |
| 579-710, gnl|rn3|chr5 (172107115-172106972) | |
| 579-710, gnl|tetNig1|chr15_random (2875907-2876061) | |
| 579-710, gnl|tetNig1|chrUn_random (109378221-109378075) | |
| 579-710, gnl|xenTro1|scaffold_177 (1680082-1679942) | |
| 579-710, gnl|xenTro1|scaffold_3 (2551800-2551641) | |
| 843-1034, gnl|bosTau2|chr16 (36721989-36721798) | |
| 843-1034, gnl|Hg17|chr1 (2114389-2114580) | |
| 843-1034, gnl|Mm7|chr4 (154279363-154279172) | |
| 1215-1387, gnl|bosTau2|chr16 (36709912-36709740) | |
| 1215-1387, gnl|Hg17|chr1 (2135652-2135808) | |
| 1215-1387, gnl|Mm7|chr4 (154261150-154260979) | |
| 1442-1562, gnl|bosTau2|chr16 (36708411-36708291) | |
| 1442-1562, gnl|Hg17|chr1 (2137497-2137617) | |
| 1442-1562, gnl|Mm7|chr4 (154258695-154258575) | |
| 1849-2231, gnl|bosTau2|chr16 (36704902-36704514) | |
| 1849-2231, gnl|Hg17|chr1 (2148523-2148991) | |
| 1849-2231, gnl|Mm7|chr4 (154252073-154251616) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-229, gnl|bosTau2|chr16 (36803930-36803707) | |
| 13-229, gnl|Hg17|chr1 (2014103-2014303) | |
| 13-229, gnl|Mm7|chr4 (154350926-154350693) | |
| 579-710, gnl|bosTau2|chr16 (36725200-36725069) | |
| 579-710, gnl|canFam2|chr34 (37815224-37815412) | |
| 579-710, gnl|canFam2|chr5 (60087751-60087899) | |
| 579-710, gnl|danRer3|chr2 (35013926-35014073) | |
| 579-710, gnl|danRer3|chr2 (35013909-35014078) | |
| 579-710, gnl|echTel1|scaffold_314592 (90820-90689) | |
| 579-710, gnl|echTel1|scaffold_314592 (90849-90661) | |
| 579-710, gnl|fr1|chrUn (18483743-18483593) | |
| 579-710, gnl|fr1|chrUn (18483793-18483589) | |
| 579-710, gnl|galGal2|chr21 (1715645-1715505) | |
| 579-710, gnl|galGal2|chr9 (19297724-19297554) | |
| 579-710, gnl|hg17|chr1 (2107809-2107966) | |
| 579-710, gnl|Hg17|chr1 (2107812-2107943) | |
| 579-710, gnl|hg17|chr3 (171470880-171471068) | |
| 579-710, gnl|loxAfr1|scaffold_164727 (4761-4912) | |
| 579-710, gnl|loxAfr1|scaffold_47197 (1459-1647) | |
| 579-710, gnl|mm7|chr3 (30843060-30843247) | |
| 579-710, gnl|mm7|chr4 (154283944-154283801) | |
| 579-710, gnl|Mm7|chr4 (154283939-154283808) | |
| 579-710, gnl|monDom2|scaffold_239 (479039-478881) | |
| 579-710, gnl|monDom2|scaffold_52 (1828546-1828358) | |
| 579-710, gnl|oryCun1|scaffold_203571 (141767-141902) | |
| 579-710, gnl|oryCun1|scaffold_212926 (1614-1802) | |
| 579-710, gnl|panTro1|chr2 (174962943-174963131) | |
| 579-710, gnl|rheMac2|chr1 (5196330-5196487) | |
| 579-710, gnl|rheMac2|chr2 (116738982-116738788) | |
| 579-710, gnl|rn3|chr2 (116705608-116705420) | |
| 579-710, gnl|rn3|chr5 (172107115-172106972) | |
| 579-710, gnl|tetNig1|chr15_random (2875907-2876061) | |
| 579-710, gnl|tetNig1|chrUn_random (109378221-109378075) | |
| 579-710, gnl|xenTro1|scaffold_177 (1680082-1679942) | |
| 579-710, gnl|xenTro1|scaffold_3 (2551800-2551641) | |
| 843-1034, gnl|bosTau2|chr16 (36721989-36721798) | |
| 843-1034, gnl|Hg17|chr1 (2114389-2114580) | |
| 843-1034, gnl|Mm7|chr4 (154279363-154279172) | |
| 1215-1387, gnl|bosTau2|chr16 (36709912-36709740) | |
| 1215-1387, gnl|Hg17|chr1 (2135652-2135808) | |
| 1215-1387, gnl|Mm7|chr4 (154261150-154260979) | |
| 1442-1562, gnl|bosTau2|chr16 (36708411-36708291) | |
| 1442-1562, gnl|Hg17|chr1 (2137497-2137617) | |
| 1442-1562, gnl|Mm7|chr4 (154258695-154258575) | |
| 1849-2231, gnl|bosTau2|chr16 (36704902-36704514) | |
| 1849-2231, gnl|Hg17|chr1 (2148523-2148991) | |
| 1849-2231, gnl|Mm7|chr4 (154252073-154251616) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| amn (0.417711) | |
| nlu (0.383362) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cst (0.140036) | |
| pla (0.133672) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| nlu (0.383362) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cst (0.140036) | |
| pla (0.133672) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |