Non-Coding RNA Search

Ss1.1-Mixn-0038f03.5

Sequence:


               
               CTGGCCCCGGACGCTGTCAGGCCTGGCACCAGCTCGGAATCAACTCCCTCTCCCCTCGCT
GGTATGAGGGCAGCAGGCATCGTGTTGGAGCAGGACGGGCAGTTGCTGCCCGGTGGCTGT
GGGTCCTGGCGGGAGAAGGAAAAGGCGTTCAAGGCCTTAATTTTGTATCATTGGGCAAAG
GGTTTGGTTCAGAAAGACAAGCTGGACAAAGGTGCAGTTCCGCGTTCTTCCAGAGGGAAG
AGCAGGGAGCCGGTGGCTCGGCTGATGGCATTAACGTCTGTTTGTTCCGCGCCGGGGGAT
TCGTGTCCAATCCCCACGGGGGCAAAGTGGGACCAGCCTCACATTCCACTGCTTCAACGT
ATCTCACTGCTTGGAGCCTATTTATTTCGTATTTATTTAACAGAGTTATGTCCTAACTAT
TTTTATAGATTTGTTTAATTAATAGCCTGTCATTTTCAAGTCCATTTTTTATTCGTATTT
ATGTTCACGGTTGATTGTACCTTCCCAACACCTGCAAGGTGGGGTGGGGAGAGGAAGGAG
GGGGGGCCGTGGGAGTGACGTGACCGTTCTCGCCACGACCGTCGTGTCTGTCCAAAGAAA
TTCCTCTCGGAACTGGCGACAGAAGAAAGGCAAGAAGACAGAAGGGCCCTGACCGCAGAG
GAAGCCCTTTGGCAGGTCCGGCTGGGACCAGCACCCAGGAAGCTTCCGGATCCAAGGGTT
TGCCTAGGAGGTGGGAAGCGTGGGAGAAATGTTAGCCCTGAAGACAGATGTCCAAACCAT
TTCTTGGACTGGGAGGATTTCTTTATTCACCCTTTCGAATGACAAGACAGTGAGGCACCC
ATCACTGTGAGTTTGGGGTGGGGGCCGGAGGAGAGGGCAGCGGGCTCCCCACCTGCACCT
GTGAAACGGGCTCCCTCTGTCCGGGGCCCCACTGCCCCTGCTCAGTAATGCTGGTCAGCG
TGCAGCTGTGCAGTCACCCCTCTGTTGCACCGGAATGGTCTGATGAGGACAATTTAAATA
GGATGCAAAGATCAATGCAAAAATTACTGTTATATATAAATAGTTATAACTGGAATTGGT
GACAAAGCGAATTAAGAAAGAATTGGAAGTTGTCATTGAAAACAGCCTTCTAATAAAGTT
GTTTCAAAGCAGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCCCGGACGCTGTCAGGCCTGGCACCAGCTCGGAATCAACTCCCTCTCCCCTCGCT
GGTATGAGGGCAGCAGGCATCGTGTTGGAGCAGGACGGGCAGTTGCTGCCCGGTGGCTGT
GGGTCCTGGCGGGAGAAGGAAAAGGCGTTCAAGGCCTTAATTTTGTATCATTGGGCAAAG
GGTTTGGTTCAGAAAGACAAGCTGGACAAAGGTGCAGTTCCGCGTTCTTCCAGAGGGAAG
AGCAGGGAGCCGGTGGCTCGGCTGATGGCATTAACGTCTGTTTGTTCCGCGCCGGGGGAT
TCGTGTCCAATCCCCACGGGGGCAAAGTGGGACCAGCCTCACATTCCACTGCTTCAACGT
ATCTCACTGCTTGGAGCCTATTTATTTCGTATTTATTTAACAGAGTTATGTCCTAACTAT
TTTTATAGATTTGTTTAATTAATAGCCTGTCATTTTCAAGTCCATTTTTTATTCGTATTT
ATGTTCACGGTTGATTGTACCTTCCCAACACCTGCAAGGTGGGGTGGGGAGAGGAAGGAG
GGGGGGCCGTGGGAGTGACGTGACCGTTCTCGCCACGACCGTCGTGTCTGTCCAAAGAAA
TTCCTCTCGGAACTGGCGACAGAAGAAAGGCAAGAAGACAGAAGGGCCCTGACCGCAGAG
GAAGCCCTTTGGCAGGTCCGGCTGGGACCAGCACCCAGGAAGCTTCCGGATCCAAGGGTT
TGCCTAGGAGGTGGGAAGCGTGGGAGAAATGTTAGCCCTGAAGACAGATGTCCAAACCAT
TTCTTGGACTGGGAGGATTTCTTTATTCACCCTTTCGAATGACAAGACAGTGAGGCACCC
ATCACTGTGAGTTTGGGGTGGGGGCCGGAGGAGAGGGCAGCGGGCTCCCCACCTGCACCT
GTGAAACGGGCTCCCTCTGTCCGGGGCCCCACTGCCCCTGCTCAGTAATGCTGGTCAGCG
TGCAGCTGTGCAGTCACCCCTCTGTTGCACCGGAATGGTCTGATGAGGACAATTTAAATA
GGATGCAAAGATCAATGCAAAAATTACTGTTATATATAAATAGTTATAACTGGAATTGGT
GACAAAGCGAATTAAGAAAGAATTGGAAGTTGTCATTGAAAACAGCCTTCTAATAAAGTT
GTTTCAAAGCAGAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1153, gnl|bosTau2|chr11 (77603894-77605056)
               

               
               1-1153, gnl|Hg17|chr9 (127949990-127951078)
               

               
               1-1153, gnl|Mm7|chr2 (32422749-32421798)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1153, gnl|bosTau2|chr11 (77603894-77605056)
               

               
               1-1153, gnl|Hg17|chr9 (127949990-127951078)
               

               
               1-1153, gnl|Mm7|chr2 (32422749-32421798)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               pla (0.267344)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

	1-1153, gnl\|bosTau2\|chr11 (77603894-77605056)
	1-1153, gnl\|Hg17\|chr9 (127949990-127951078)
	1-1153, gnl\|Mm7\|chr2 (32422749-32421798)

	pla (0.267344)
	ece (0.229305)
	eye (0.170503)
	cut (0.169924)
	tbr (0.154178)
	ste (0.135208)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	cly (0.120642)
	pgl (0.118483)