Non-Coding RNA Search

Ss1.1-Mixn-0038f23.5

Sequence:


               
               CAGATGCAGGCGGCACCACCGCAGGGCGCCCTGGAGGAGCTGAAAGTGCAGGTGCAGGAG
GTGCGCTCCCAGCTTGGCGCGCGGGACCCAAGTTCCACGTCCAAGGCCGTGTCCACATCC
AAGGAGTAGGAACCTGCTGAAGCCTGAACTTAGACGTGGCCATGTGTGCAGTGATGTGGC
CTTCTCCCTGCATTGCCCCGGCCTGTGCTGGCCCAGTGGAAACCACCAGGATCTTGATGG
AACTGGGATTAGCTCACCTCCTACTGATGACCAGTGGTGCCTTCCACTGGGACCCGCCCC
CTGGCAGGGGAAGCCTTCCAGCGTGGCCCCCTCCAACTGCTAGCTCCTTGGTACAGTGGG
CAGTGCCCCTGGCTCCACCCCCCACGCCAAGCTACAGGGCTCTGCGAGGTCCTCGCTGGC
AGAACAGCATGCTCGCTCTTCTGACAGAAGAAAAATTGGAACAGGACTTAAGCCAGATCA
ACCCGTCAGCCCCCTGTTTACCTGATCGGTGTTACCTTTCCCTGGGAGGCTCCTCCTTTG
CACTGGAAGCCCCCCTTTGCTTTGTCAGTTGGTACAGGCCGTTGTAAGGCAATGCTGTGT
CTTTAAAAGAACTTTTGTCTCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATGCAGGCGGCACCACCGCAGGGCGCCCTGGAGGAGCTGAAAGTGCAGGTGCAGGAG
GTGCGCTCCCAGCTTGGCGCGCGGGACCCAAGTTCCACGTCCAAGGCCGTGTCCACATCC
AAGGAGTAGGAACCTGCTGAAGCCTGAACTTAGACGTGGCCATGTGTGCAGTGATGTGGC
CTTCTCCCTGCATTGCCCCGGCCTGTGCTGGCCCAGTGGAAACCACCAGGATCTTGATGG
AACTGGGATTAGCTCACCTCCTACTGATGACCAGTGGTGCCTTCCACTGGGACCCGCCCC
CTGGCAGGGGAAGCCTTCCAGCGTGGCCCCCTCCAACTGCTAGCTCCTTGGTACAGTGGG
CAGTGCCCCTGGCTCCACCCCCCACGCCAAGCTACAGGGCTCTGCGAGGTCCTCGCTGGC
AGAACAGCATGCTCGCTCTTCTGACAGAAGAAAAATTGGAACAGGACTTAAGCCAGATCA
ACCCGTCAGCCCCCTGTTTACCTGATCGGTGTTACCTTTCCCTGGGAGGCTCCTCCTTTG
CACTGGAAGCCCCCCTTTGCTTTGTCAGTTGGTACAGGCCGTTGTAAGGCAATGCTGTGT
CTTTAAAAGAACTTTTGTCTCAGC

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-277, gnl|bosTau2|chr18 (38351536-38351831)
               

               
               1-277, gnl|Hg17|chr19 (50748737-50748444)
               

               
               1-277, gnl|Mm7|chr7 (16927400-16927695)
               


               
               287-621, gnl|bosTau2|chr18 (38351819-38352142)
               

               
               287-621, gnl|Hg17|chr19 (50748462-50748139)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-277, gnl|bosTau2|chr18 (38351536-38351831)
               

               
               1-277, gnl|Hg17|chr19 (50748737-50748444)
               

               
               1-277, gnl|Mm7|chr7 (16927400-16927695)
               


               
               287-621, gnl|bosTau2|chr18 (38351819-38352142)
               

               
               287-621, gnl|Hg17|chr19 (50748462-50748139)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-277, gnl\|bosTau2\|chr18 (38351536-38351831)
	1-277, gnl\|Hg17\|chr19 (50748737-50748444)
	1-277, gnl\|Mm7\|chr7 (16927400-16927695)

	287-621, gnl\|bosTau2\|chr18 (38351819-38352142)
	287-621, gnl\|Hg17\|chr19 (50748462-50748139)