Non-Coding RNA Search

Ss1.1-Mixn-0038k21.5

Sequence:


               
               TGTGAGACCCCCTCTTGTAGGAGGGTAACTCCCCCGCTGCCTTCAGCCTGAAAAACCCAG
TGGGCGCTGGCGGTGGGGGTCGGGGGACTCGACGTCCTTAACCGCGGGATTGGGATTGCA
GGGCGGTCAGCTCGCTTATCTGCTTCCCCAGCGACCGCTCCATACACATTGGAGAGAAAG
AAGAAAAGCCCCGAAGGACCCAAGCCTGCCCTCAGCAGCAAGCTTGGTTCAAGCCCGGGA
GGCCTCAGCAGCCCCCGTCTGGGCCCTGTCAGCTGAGGGTTCTGGCTTCGCTGCCGGTCC
CCCGGCCTCTGCATCTCAGTGGATGGGTCCGCCCGTGCCCGGGCTGGGGCATCCCGCCTC
TGGCCTCCCACCCCCTGCTGCCCCCGCTTCTCCCCAGCGCCAGGCCGGCCTCTCTGGGAC
CCAGCTCACTGCCGTGTCTTTGCTTCGCAGTGATCAGGGCCAAGGCCGTCAGCGAGAAGG
AGGTGGACTCCGGGAACGACATCTACGGCAACCCCATCAAACGGATCCAGTACGAAATCA
AGCAGATAAAGATGTTCAAGGGACCTGACAAGGACATAGAGTTTATCTACACGGCCCCCT
CCTCCGCGGTGTGCGGCGTCTGGACATCGGAGGAAAGAAGGAGTACCTCATCGCAGGAAA
GGCCGAGGGGCACGGCAAGATGCACATCACGCTCTGTGACTTCATCGTGCCCTGGGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAGACCCCCTCTTGTAGGAGGGTAACTCCCCCGCTGCCTTCAGCCTGAAAAACCCAG
TGGGCGCTGGCGGTGGGGGTCGGGGGACTCGACGTCCTTAACCGCGGGATTGGGATTGCA
GGGCGGTCAGCTCGCTTATCTGCTTCCCCAGCGACCGCTCCATACACATTGGAGAGAAAG
AAGAAAAGCCCCGAAGGACCCAAGCCTGCCCTCAGCAGCAAGCTTGGTTCAAGCCCGGGA
GGCCTCAGCAGCCCCCGTCTGGGCCCTGTCAGCTGAGGGTTCTGGCTTCGCTGCCGGTCC
CCCGGCCTCTGCATCTCAGTGGATGGGTCCGCCCGTGCCCGGGCTGGGGCATCCCGCCTC
TGGCCTCCCACCCCCTGCTGCCCCCGCTTCTCCCCAGCGCCAGGCCGGCCTCTCTGGGAC
CCAGCTCACTGCCGTGTCTTTGCTTCGCAGTGATCAGGGCCAAGGCCGTCAGCGAGAAGG
AGGTGGACTCCGGGAACGACATCTACGGCAACCCCATCAAACGGATCCAGTACGAAATCA
AGCAGATAAAGATGTTCAAGGGACCTGACAAGGACATAGAGTTTATCTACACGGCCCCCT
CCTCCGCGGTGTGCGGCGTCTGGACATCGGAGGAAAGAAGGAGTACCTCATCGCAGGAAA
GGCCGAGGGGCACGGCAAGATGCACATCACGCTCTGTGACTTCATCGTGCCCTGGGACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3426087|emb|CAA09080.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3426087|emb|CAA09080.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               11-155, + strand, RNAz p=0.823974

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-155, + strand, RNAz p=0.823974

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-551, gnl|bosTau2|chr19 (46157656-46157072)
               

               
               11-551, gnl|Hg17|chr17 (74382150-74381496)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-551, gnl|bosTau2|chr19 (46157656-46157072)
               

               
               11-551, gnl|Hg17|chr17 (74382150-74381496)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	11-551, gnl\|bosTau2\|chr19 (46157656-46157072)
	11-551, gnl\|Hg17\|chr17 (74382150-74381496)