Non-Coding RNA Search

Ss1.1-Mixn-0038m09.5

Sequence:


               
               ACATGGGCTGAATGTGTGTGTTGGGGGAACTCATGTTTGCCATATGTTGCTTCTGCCTAA
TCAGGAACGTTGTCATCCCATCACCCCCTTGGTAACAAAGCCAGCCAAGATTGTCCTCTT
CATTGGAACTGCCCACAGTTTAGAAAATTTGCTTTGTCCTCAACAAACTTGAAAGTCACT
TATTTTCTAAATCTGATTATCTGATGACTTAATAATTTCCTATGGCTATTAATTCTTAGA
CTTTTATTTGAAAATAGACTGGTGTTAAGGAAGCAATGAGGTCAAAGGAGACAGGTTCCA
AAGGAGAGTATGTATGTATATATTTCTGGGCAGGGCCAGGGCTAGTATGAGTTGAGCACT
CCTCTCAGGTTCAAAATTTAAGGAGATGACGAAAAACAGTAATCAAGATAAGTACTGTTT
TGGAGTTCCCATCGTGGCTCAGTGGTAATGAACCCAACTAGTATCCATGAGGATGCAGGT
TTGATCCCTGGCCTCGCTCAGTGGGTTAAGGATCTGGCCCTGCCCTGAGCTGTGGTGTAG
GTCACAGACGCAGTTCGGATCCTGAGTTGCTGTGGCTATGGGGTAGGCTGGCGGCTATAG
CTCAGATTCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGGGCTGAATGTGTGTGTTGGGGGAACTCATGTTTGCCATATGTTGCTTCTGCCTAA
TCAGGAACGTTGTCATCCCATCACCCCCTTGGTAACAAAGCCAGCCAAGATTGTCCTCTT
CATTGGAACTGCCCACAGTTTAGAAAATTTGCTTTGTCCTCAACAAACTTGAAAGTCACT
TATTTTCTAAATCTGATTATCTGATGACTTAATAATTTCCTATGGCTATTAATTCTTAGA
CTTTTATTTGAAAATAGACTGGTGTTAAGGAAGCAATGAGGTCAAAGGAGACAGGTTCCA
AAGGAGAGTATGTATGTATATATTTCTGGGCAGGGCCAGGGCTAGTATGAGTTGAGCACT
CCTCTCAGGTTCAAAATTTAAGGAGATGACGAAAAACAGTAATCAAGATAAGTACTGTTT
TGGAGTTCCCATCGTGGCTCAGTGGTAATGAACCCAACTAGTATCCATGAGGATGCAGGT
TTGATCCCTGGCCTCGCTCAGTGGGTTAAGGATCTGGCCCTGCCCTGAGCTGTGGTGTAG
GTCACAGACGCAGTTCGGATCCTGAGTTGCTGTGGCTATGGGGTAGGCTGGCGGCTATAG
CTCAGATTCAAC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-421, gnl|bosTau2|chr3 (17534822-17535230)
               

               
               1-421, gnl|Hg17|chr1 (146727107-146726761)
               

               
               1-421, gnl|Mm7|chr3 (96031626-96032142)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-421, gnl|bosTau2|chr3 (17534822-17535230)
               

               
               1-421, gnl|Hg17|chr1 (146727107-146726761)
               

               
               1-421, gnl|Mm7|chr3 (96031626-96032142)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               eep (0.122564)

	1-421, gnl\|bosTau2\|chr3 (17534822-17535230)
	1-421, gnl\|Hg17\|chr1 (146727107-146726761)
	1-421, gnl\|Mm7\|chr3 (96031626-96032142)