Ss1.1-Mixn-0038n08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCCTTTTCTCTTGGCGGCGGAGCAAGGCTAAAGCTGATTCCTGTTAATTTGCTACTCA GTCGAGTTATCCATTTATCTGGACTTGATTTGAGGTGATGTTTAGTCTCTGTAAAGAGGG TACGGGCAGACAGGTCCGCTGTCTCAGCGAGCTGGTTACGATGCTGTGGCCTCTGCTGTT TCTGGTCTAATGCACATCACAGGACCTGAGGATGGAGATCCAGTTCGTCCAGGCGTGGCC ATGACCGATCTTGCCACTGGCCTTTTTGCTTATGGAGCCATTATGGCTCCACGCGTCCGC GGACGCGTGGGCGGAAAAGGACTCTTCATTGATTGTAACCTACTGTCATCCCAGGTGGCA TGTTTGACCCAGGTAGCTGCTAATTATCTTATTGGCCAAAAAGAAGCTCAGCGTTGGGGC ACAGCTCATGGCAGTATTGTTCCTTACCAGGCTTTTAAAACCAAGGATGGATATCTTGTA GTTGGAGCAGGAAATAACCAACAGTTTGCGACTGTGTGCAAGATCTTGAATTTGCCTGAA CTGATTGGCGATGCCAAGTACAGAACCAACCACCTTCGAGTACAGAATAGAAAAGAGCTT ATTAAAATTCTTTCAACACGGTTTGAAGAAGAAATGACCAGCAAGTGGTTACACCTCTTC GAAGGCAGTGGAGTCCCGTACGGCCCATTTAACAGCATGAGGGATGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCCTTTTCTCTTGGCGGCGGAGCAAGGCTAAAGCTGATTCCTGTTAATTTGCTACTCA GTCGAGTTATCCATTTATCTGGACTTGATTTGAGGTGATGTTTAGTCTCTGTAAAGAGGG TACGGGCAGACAGGTCCGCTGTCTCAGCGAGCTGGTTACGATGCTGTGGCCTCTGCTGTT TCTGGTCTAATGCACATCACAGGACCTGAGGATGGAGATCCAGTTCGTCCAGGCGTGGCC ATGACCGATCTTGCCACTGGCCTTTTTGCTTATGGAGCCATTATGGCTCCACGCGTCCGC GGACGCGTGGGCGGAAAAGGACTCTTCATTGATTGTAACCTACTGTCATCCCAGGTGGCA TGTTTGACCCAGGTAGCTGCTAATTATCTTATTGGCCAAAAAGAAGCTCAGCGTTGGGGC ACAGCTCATGGCAGTATTGTTCCTTACCAGGCTTTTAAAACCAAGGATGGATATCTTGTA GTTGGAGCAGGAAATAACCAACAGTTTGCGACTGTGTGCAAGATCTTGAATTTGCCTGAA CTGATTGGCGATGCCAAGTACAGAACCAACCACCTTCGAGTACAGAATAGAAAAGAGCTT ATTAAAATTCTTTCAACACGGTTTGAAGAAGAAATGACCAGCAAGTGGTTACACCTCTTC GAAGGCAGTGGAGTCCCGTACGGCCCATTTAACAGCATGAGGGATGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 7-119, + strand, RNAz p=0.743779 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 7-119, + strand, RNAz p=0.743779 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 2-119, gnl|bosTau2|chr4 (47533092-47532975) | |
| 2-119, gnl|canFam2|chr18 (12674109-12673796) | |
| 2-119, gnl|echTel1|scaffold_200455 (5006-4724) | |
| 2-119, gnl|galGal2|chr2 (49119159-49119483) | |
| 2-119, gnl|hg17|chr7 (40036594-40036911) | |
| 2-119, gnl|Hg17|chr7 (40036644-40036764) | |
| 2-119, gnl|loxAfr1|scaffold_59502 (9868-9553) | |
| 2-119, gnl|mm7|chr13 (16962919-16962598) | |
| 2-119, gnl|Mm7|chr13 (16962879-16962758) | |
| 2-119, gnl|panTro1|chr6 (44218509-44218192) | |
| 2-119, gnl|rheMac2|chr3 (86129286-86128970) | |
| 2-119, gnl|rn3|chr17 (55616098-55616414) | |
| 209-356, gnl|bosTau2|chr4 (47482999-47482852) | |
| 209-356, gnl|canFam2|chr18 (12622582-12622404) | |
| 209-356, gnl|danRer3|chrUn (11795270-11795116) | |
| 209-356, gnl|dasNov1|scaffold_25964 (40372-40194) | |
| 209-356, gnl|echTel1|scaffold_65632 (3770-3948) | |
| 209-356, gnl|galGal2|chr2 (49132082-49132263) | |
| 209-356, gnl|hg17|chr7 (40087350-40087528) | |
| 209-356, gnl|Hg17|chr7 (40087350-40087497) | |
| 209-356, gnl|loxAfr1|scaffold_6282 (35221-35399) | |
| 209-356, gnl|mm7|chr13 (16916245-16916070) | |
| 209-356, gnl|Mm7|chr13 (16916243-16916096) | |
| 209-356, gnl|oryCun1|scaffold_174355 (52058-52236) | |
| 209-356, gnl|panTro1|chr6 (44167694-44167516) | |
| 209-356, gnl|rheMac2|chr3 (86073574-86073396) | |
| 209-356, gnl|rn3|chr17 (55663708-55663883) | |
| 209-356, gnl|tetNig1|chrUn_random (914158-914008) | |
| 209-356, gnl|xenTro1|scaffold_26 (1277073-1276885) | |
| 521-622, gnl|bosTau2|chr4 (47245084-47244983) | |
| 521-622, gnl|canFam2|chr18 (12440081-12439963) | |
| 521-622, gnl|dasNov1|scaffold_7810 (46882-46764) | |
| 521-622, gnl|echTel1|scaffold_120840 (591-709) | |
| 521-622, gnl|hg17|chr7 (40271928-40272046) | |
| 521-622, gnl|Hg17|chr7 (40271938-40272039) | |
| 521-622, gnl|mm7|chr13 (16663802-16663684) | |
| 521-622, gnl|Mm7|chr13 (16663790-16663689) | |
| 521-622, gnl|oryCun1|scaffold_214087 (47820-47938) | |
| 521-622, gnl|panTro1|chr6 (43982297-43982179) | |
| 521-622, gnl|rheMac2|chr3 (85884098-85883980) | |
| 521-622, gnl|rn3|chr17 (55897291-55897409) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-119, gnl|bosTau2|chr4 (47533092-47532975) | |
| 2-119, gnl|canFam2|chr18 (12674109-12673796) | |
| 2-119, gnl|echTel1|scaffold_200455 (5006-4724) | |
| 2-119, gnl|galGal2|chr2 (49119159-49119483) | |
| 2-119, gnl|hg17|chr7 (40036594-40036911) | |
| 2-119, gnl|Hg17|chr7 (40036644-40036764) | |
| 2-119, gnl|loxAfr1|scaffold_59502 (9868-9553) | |
| 2-119, gnl|mm7|chr13 (16962919-16962598) | |
| 2-119, gnl|Mm7|chr13 (16962879-16962758) | |
| 2-119, gnl|panTro1|chr6 (44218509-44218192) | |
| 2-119, gnl|rheMac2|chr3 (86129286-86128970) | |
| 2-119, gnl|rn3|chr17 (55616098-55616414) | |
| 209-356, gnl|bosTau2|chr4 (47482999-47482852) | |
| 209-356, gnl|canFam2|chr18 (12622582-12622404) | |
| 209-356, gnl|danRer3|chrUn (11795270-11795116) | |
| 209-356, gnl|dasNov1|scaffold_25964 (40372-40194) | |
| 209-356, gnl|echTel1|scaffold_65632 (3770-3948) | |
| 209-356, gnl|galGal2|chr2 (49132082-49132263) | |
| 209-356, gnl|hg17|chr7 (40087350-40087528) | |
| 209-356, gnl|Hg17|chr7 (40087350-40087497) | |
| 209-356, gnl|loxAfr1|scaffold_6282 (35221-35399) | |
| 209-356, gnl|mm7|chr13 (16916245-16916070) | |
| 209-356, gnl|Mm7|chr13 (16916243-16916096) | |
| 209-356, gnl|oryCun1|scaffold_174355 (52058-52236) | |
| 209-356, gnl|panTro1|chr6 (44167694-44167516) | |
| 209-356, gnl|rheMac2|chr3 (86073574-86073396) | |
| 209-356, gnl|rn3|chr17 (55663708-55663883) | |
| 209-356, gnl|tetNig1|chrUn_random (914158-914008) | |
| 209-356, gnl|xenTro1|scaffold_26 (1277073-1276885) | |
| 521-622, gnl|bosTau2|chr4 (47245084-47244983) | |
| 521-622, gnl|canFam2|chr18 (12440081-12439963) | |
| 521-622, gnl|dasNov1|scaffold_7810 (46882-46764) | |
| 521-622, gnl|echTel1|scaffold_120840 (591-709) | |
| 521-622, gnl|hg17|chr7 (40271928-40272046) | |
| 521-622, gnl|Hg17|chr7 (40271938-40272039) | |
| 521-622, gnl|mm7|chr13 (16663802-16663684) | |
| 521-622, gnl|Mm7|chr13 (16663790-16663689) | |
| 521-622, gnl|oryCun1|scaffold_214087 (47820-47938) | |
| 521-622, gnl|panTro1|chr6 (43982297-43982179) | |
| 521-622, gnl|rheMac2|chr3 (85884098-85883980) | |
| 521-622, gnl|rn3|chr17 (55897291-55897409) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) |