Non-Coding RNA Search

Ss1.1-Mixn-0038p10.5

Sequence:


               
               AAGCTCACATGGGCCGGAGCCGAGGGGTTTTCGGGCCTGGACTCCCTGCAGGAGCTGGAC
CTGTCGGGCACGGGCCTGGTGCCCCTGCCCGAGAAGCTGCTCCTCCACCTGCCAGCACTG
CAGAGCGTCAGCGTGGGTCAGGGCGTGTGGTGCCGGCGCCTGGTGCGGGAGGGCACCTAC
CCCCGGCAGCCCGGCTCCACCCCCAAGGTGGCCCTGCACTGCATAGACACCGGGGAGCCG
GCTCCTGGGGGCCCGGATATCTTGTGACAAACGGTGGGACCTGGAGCCATGTCACGGACT
GCACCCTGGGCTTCCTCAGGTCCTGGGTAACTTATATTTTAATGTGCCAATGCCCACGGG
GACTCTGCAGGCCTACGTGGCAGCATCATTGAAAGTGAGGCTTTGGACCTGGGACCTGCC
CGGGAGCTAAGTCTGGTCCCTTTGTCTCTGTTGCTCCCCAGACCAGCCGAGGGTCTTCGA
TGCCAAACCAGACAGCAGTCCCCTGCTGTCCTTCCCCACTTTTCCCCAAAGTGCCTTCCC
TGGGCCCTGGACCAGCCTGACCTGTGACAGGAGGGTGGGAGGCACGTAGTGCTCGGGGGC
AAGAGGTCAGGCCCAGCCACTGGGGCCCGGGTTTCTTTTAGGACAGAGCCCTCTCTTTGC
TGTGGGCGTAAGGCCCACTTCATCCTTTTTTCTTCCCCTGGAACTCTGGGTGGAACTTCA
GTTATGGAAAGGACTGGAAAAAAAAAAATCAAATCCGCCTCCTCATGTGGCAGGTGGGGA
AACGGAGGCCTAGAGAAGGACACATGATCATCTGAGGTCCCGTGGTGGCAGAGGCATGAC
TGGACCCAGTGCCCCGCCTCCAGCAGGGCCCCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCTCACATGGGCCGGAGCCGAGGGGTTTTCGGGCCTGGACTCCCTGCAGGAGCTGGAC
CTGTCGGGCACGGGCCTGGTGCCCCTGCCCGAGAAGCTGCTCCTCCACCTGCCAGCACTG
CAGAGCGTCAGCGTGGGTCAGGGCGTGTGGTGCCGGCGCCTGGTGCGGGAGGGCACCTAC
CCCCGGCAGCCCGGCTCCACCCCCAAGGTGGCCCTGCACTGCATAGACACCGGGGAGCCG
GCTCCTGGGGGCCCGGATATCTTGTGACAAACGGTGGGACCTGGAGCCATGTCACGGACT
GCACCCTGGGCTTCCTCAGGTCCTGGGTAACTTATATTTTAATGTGCCAATGCCCACGGG
GACTCTGCAGGCCTACGTGGCAGCATCATTGAAAGTGAGGCTTTGGACCTGGGACCTGCC
CGGGAGCTAAGTCTGGTCCCTTTGTCTCTGTTGCTCCCCAGACCAGCCGAGGGTCTTCGA
TGCCAAACCAGACAGCAGTCCCCTGCTGTCCTTCCCCACTTTTCCCCAAAGTGCCTTCCC
TGGGCCCTGGACCAGCCTGACCTGTGACAGGAGGGTGGGAGGCACGTAGTGCTCGGGGGC
AAGAGGTCAGGCCCAGCCACTGGGGCCCGGGTTTCTTTTAGGACAGAGCCCTCTCTTTGC
TGTGGGCGTAAGGCCCACTTCATCCTTTTTTCTTCCCCTGGAACTCTGGGTGGAACTTCA
GTTATGGAAAGGACTGGAAAAAAAAAAATCAAATCCGCCTCCTCATGTGGCAGGTGGGGA
AACGGAGGCCTAGAGAAGGACACATGATCATCTGAGGTCCCGTGGTGGCAGAGGCATGAC
TGGACCCAGTGCCCCGCCTCCAGCAGGGCCCCTTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               3-121, - strand, RNAz p=0.973117
               

               
               609-699, - strand, RNAz p=0.883808

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.973117
               

               
               609-699, - strand, RNAz p=0.883808

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               3-587, gnl|bosTau2|chr13 (22410653-22410062)
               

               
               3-587, gnl|Hg17|chr11 (76185106-76185774)
               

               
               3-587, gnl|Mm7|chr7 (94384224-94383595)
               


               
               609-876, gnl|bosTau2|chr13 (22410065-22409795)
               

               
               609-876, gnl|canFam2|chr21 (24918863-24918455)
               

               
               609-876, gnl|hg17|chr11 (76185606-76186007)
               

               
               609-876, gnl|Hg17|chr11 (76185714-76186024)
               

               
               609-876, gnl|mm7|chr7 (94383727-94383365)
               

               
               609-876, gnl|Mm7|chr7 (94383598-94383351)
               

               
               609-876, gnl|panTro1|chr9 (77483177-77483570)
               

               
               609-876, gnl|rheMac2|chr14 (74966201-74966605)
               

               
               609-876, gnl|rn3|chr1 (155690611-155690256)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-587, gnl|bosTau2|chr13 (22410653-22410062)
               

               
               3-587, gnl|Hg17|chr11 (76185106-76185774)
               

               
               3-587, gnl|Mm7|chr7 (94384224-94383595)
               


               
               609-876, gnl|bosTau2|chr13 (22410065-22409795)
               

               
               609-876, gnl|canFam2|chr21 (24918863-24918455)
               

               
               609-876, gnl|hg17|chr11 (76185606-76186007)
               

               
               609-876, gnl|Hg17|chr11 (76185714-76186024)
               

               
               609-876, gnl|mm7|chr7 (94383727-94383365)
               

               
               609-876, gnl|Mm7|chr7 (94383598-94383351)
               

               
               609-876, gnl|panTro1|chr9 (77483177-77483570)
               

               
               609-876, gnl|rheMac2|chr14 (74966201-74966605)
               

               
               609-876, gnl|rn3|chr1 (155690611-155690256)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               col (0.195008)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               nmm (0.132802)

	3-121, - strand, RNAz p=0.973117
	609-699, - strand, RNAz p=0.883808

	3-587, gnl\|bosTau2\|chr13 (22410653-22410062)
	3-587, gnl\|Hg17\|chr11 (76185106-76185774)
	3-587, gnl\|Mm7\|chr7 (94384224-94383595)

	609-876, gnl\|bosTau2\|chr13 (22410065-22409795)
	609-876, gnl\|canFam2\|chr21 (24918863-24918455)
	609-876, gnl\|hg17\|chr11 (76185606-76186007)
	609-876, gnl\|Hg17\|chr11 (76185714-76186024)
	609-876, gnl\|mm7\|chr7 (94383727-94383365)
	609-876, gnl\|Mm7\|chr7 (94383598-94383351)
	609-876, gnl\|panTro1\|chr9 (77483177-77483570)
	609-876, gnl\|rheMac2\|chr14 (74966201-74966605)
	609-876, gnl\|rn3\|chr1 (155690611-155690256)