Ss1.1-Mixn-0039f23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAATTGGCTGGTGGCCACCAAGAAAGCCCAGGAGTGGCAGCCCGTCTACACCATGAGCCA GCTGAGTTTCGATCGGATCCTTAAGAATGACATTATGCAAGGCGAGCACCTTGGGAGAGG CACGCGGACGCACATCTACTCCGGCACCCTCATGGACTACAAGGACGACGAAGGGACTTC CGAAGAGAAGAGAAAAATAAAAGTGATCCTCAAAGTCTTAGACCCCAGCCACAGGGACAT CTCTCTGGCAAGTGTCTTCCTCATGACTCCCCTGTGCCCTCCCCGACTCGGGAGCCGGTA GTACCTCTACGGCGTCTGTGTCCGGGACGTGGAGAACATCATGGTGGAGGAGTTTGTGGA GGGGGGACCCCTGGATCTCTTCATGCACCGGAAAAGCGACGTCCTCACCACACCCTGGAA GTTCAAAGTTGCCAAACAGCTGGCCAGCGCCCTGAGTTACCTGGAGGATAAAGACCTGGT CCATGGAAATGTGTGCACTAAAAACCTCCTTCTGGCCCGTGAGGGCATCGACAGCGAGTG CGGCCCGTTCATCAAGCTCAGTGACCCCGGCATCCCCATCACGGTGCTGTCCAGGCAAGA GTGCATAGAACGAATCCCGTGGATCGCTCCCGAATGTGTTGAGGACTCCAAGAACCTGAG TGTGGCTGCGGACAAATGGAGCTTTGGAACCACGCTCTGGGAGATCTGCTACAATGGCGA GATCCCCTTGAAAGACAAGACACTCATTGAGAAAGAGAGATTCTATGAAAGCCGATGTAG GCCGGTGACCCCATCTTGTAAGGAGCTGGCTGACCTTATGACCCGCTGCATGAACTACGA CCCCAACCAGAGACCCTTCTTCCGAGCCATCATGAGAGACATCAATAAGCTGGAGGAACA GAATCCAGACATTGTATCAGAAAAAAAGCCAGCAACTGAGGTGGATCCCACACATTTTGA AAAGCGGTTCTTAAAGAGGATCCGTGACCTGGGAGAGGGCCACTTTGGGAAGGTCGAGCT TTGTAGGTATGACCCCGAGGGGGACAACACAGGGGAGCAGGTGGCTGTCAAGTCCCTGAA GCCTGAGAGCGGAGGAAACACATAGCTGATCTGAAGAAAGGAGATTGAATCTTGAGAAAC CTTTATCACGAGAACATTGTCAAAGTATAAGGCATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAATTGGCTGGTGGCCACCAAGAAAGCCCAGGAGTGGCAGCCCGTCTACACCATGAGCCA GCTGAGTTTCGATCGGATCCTTAAGAATGACATTATGCAAGGCGAGCACCTTGGGAGAGG CACGCGGACGCACATCTACTCCGGCACCCTCATGGACTACAAGGACGACGAAGGGACTTC CGAAGAGAAGAGAAAAATAAAAGTGATCCTCAAAGTCTTAGACCCCAGCCACAGGGACAT CTCTCTGGCAAGTGTCTTCCTCATGACTCCCCTGTGCCCTCCCCGACTCGGGAGCCGGTA GTACCTCTACGGCGTCTGTGTCCGGGACGTGGAGAACATCATGGTGGAGGAGTTTGTGGA GGGGGGACCCCTGGATCTCTTCATGCACCGGAAAAGCGACGTCCTCACCACACCCTGGAA GTTCAAAGTTGCCAAACAGCTGGCCAGCGCCCTGAGTTACCTGGAGGATAAAGACCTGGT CCATGGAAATGTGTGCACTAAAAACCTCCTTCTGGCCCGTGAGGGCATCGACAGCGAGTG CGGCCCGTTCATCAAGCTCAGTGACCCCGGCATCCCCATCACGGTGCTGTCCAGGCAAGA GTGCATAGAACGAATCCCGTGGATCGCTCCCGAATGTGTTGAGGACTCCAAGAACCTGAG TGTGGCTGCGGACAAATGGAGCTTTGGAACCACGCTCTGGGAGATCTGCTACAATGGCGA GATCCCCTTGAAAGACAAGACACTCATTGAGAAAGAGAGATTCTATGAAAGCCGATGTAG GCCGGTGACCCCATCTTGTAAGGAGCTGGCTGACCTTATGACCCGCTGCATGAACTACGA CCCCAACCAGAGACCCTTCTTCCGAGCCATCATGAGAGACATCAATAAGCTGGAGGAACA GAATCCAGACATTGTATCAGAAAAAAAGCCAGCAACTGAGGTGGATCCCACACATTTTGA AAAGCGGTTCTTAAAGAGGATCCGTGACCTGGGAGAGGGCCACTTTGGGAAGGTCGAGCT TTGTAGGTATGACCCCGAGGGGGACAACACAGGGGAGCAGGTGGCTGTCAAGTCCCTGAA GCCTGAGAGCGGAGGAAACACATAGCTGATCTGAAGAAAGGAGATTGAATCTTGAGAAAC CTTTATCACGAGAACATTGTCAAAGTATAAGGCATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 137-256, + strand, RNAz p=0.570133 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 137-256, + strand, RNAz p=0.570133 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 98-262, gnl|bosTau2|chr3 (54749296-54749457) | |
| 98-262, gnl|canFam2|chr5 (48398300-48398136) | |
| 98-262, gnl|danRer3|chr6 (15252039-15251888) | |
| 98-262, gnl|dasNov1|scaffold_7725 (2143-2308) | |
| 98-262, gnl|echTel1|scaffold_314860 (15669-15506) | |
| 98-262, gnl|fr1|chrUn (222401140-222400986) | |
| 98-262, gnl|galGal2|chr8 (28431997-28432164) | |
| 98-262, gnl|hg17|chr1 (65025213-65025377) | |
| 98-262, gnl|Hg17|chr1 (65025382-65025210) | |
| 98-262, gnl|loxAfr1|scaffold_20657 (21859-22022) | |
| 98-262, gnl|mm7|chr4 (100540889-100541038) | |
| 98-262, gnl|Mm7|chr4 (100541043-100540882) | |
| 98-262, gnl|oryCun1|scaffold_206796 (123835-123999) | |
| 98-262, gnl|panTro1|chr1 (63365284-63365448) | |
| 98-262, gnl|rheMac2|chr1 (67619858-67620022) | |
| 98-262, gnl|rn3|chr5 (121821828-121821977) | |
| 98-262, gnl|tetNig1|chr1 (15747046-15746892) | |
| 98-262, gnl|xenTro1|scaffold_1 (1708696-1708544) | |
| 463-604, gnl|bosTau2|chr3 (54751516-54751656) | |
| 463-604, gnl|Hg17|chr1 (65022594-65022454) | |
| 463-604, gnl|Mm7|chr4 (100538382-100538242) | |
| 744-902, gnl|bosTau2|chr3 (54755804-54755963) | |
| 744-902, gnl|canFam2|chr5 (48403217-48403058) | |
| 744-902, gnl|danRer3|chr6 (15261035-15260877) | |
| 744-902, gnl|dasNov1|scaffold_10163 (28188-28050) | |
| 744-902, gnl|echTel1|scaffold_217050 (14610-14467) | |
| 744-902, gnl|fr1|chrUn (222402936-222402778) | |
| 744-902, gnl|galGal2|chr8 (28428089-28428248) | |
| 744-902, gnl|hg17|chr1 (65019150-65019309) | |
| 744-902, gnl|Hg17|chr1 (65019314-65019155) | |
| 744-902, gnl|loxAfr1|scaffold_20657 (14846-15005) | |
| 744-902, gnl|mm7|chr4 (100535449-100535608) | |
| 744-902, gnl|Mm7|chr4 (100535613-100535454) | |
| 744-902, gnl|monDom2|scaffold_40 (9944804-9944645) | |
| 744-902, gnl|oryCun1|scaffold_206796 (117964-118123) | |
| 744-902, gnl|panTro1|chr1 (63359160-63359319) | |
| 744-902, gnl|rheMac2|chr1 (67613824-67613983) | |
| 744-902, gnl|rn3|chr5 (121816242-121816401) | |
| 744-902, gnl|tetNig1|chr1 (15748831-15748673) | |
| 744-902, gnl|xenTro1|scaffold_1 (1715188-1715029) | |
| 996-1175, gnl|bosTau2|chr3 (54757238-54757418) | |
| 996-1175, gnl|canFam2|chr5 (48404743-48404575) | |
| 996-1175, gnl|danRer3|chr6 (15262297-15262129) | |
| 996-1175, gnl|dasNov1|scaffold_247641 (4026-4194) | |
| 996-1175, gnl|echTel1|scaffold_324241 (43019-43187) | |
| 996-1175, gnl|fr1|chrUn (222403747-222403583) | |
| 996-1175, gnl|galGal2|chr8 (28426242-28426410) | |
| 996-1175, gnl|hg17|chr1 (65017302-65017470) | |
| 996-1175, gnl|Hg17|chr1 (65017501-65017321) | |
| 996-1175, gnl|loxAfr1|scaffold_20657 (13331-13499) | |
| 996-1175, gnl|mm7|chr4 (100534188-100534356) | |
| 996-1175, gnl|Mm7|chr4 (100534387-100534207) | |
| 996-1175, gnl|monDom2|scaffold_40 (9946822-9946648) | |
| 996-1175, gnl|oryCun1|scaffold_206796 (117094-117358) | |
| 996-1175, gnl|panTro1|chr1 (63357313-63357481) | |
| 996-1175, gnl|rheMac2|chr1 (67611977-67612145) | |
| 996-1175, gnl|rn3|chr5 (121814999-121815167) | |
| 996-1175, gnl|tetNig1|chr1 (15749708-15749540) | |
| 996-1175, gnl|xenTro1|scaffold_1 (1718382-1718217) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-262, gnl|bosTau2|chr3 (54749296-54749457) | |
| 98-262, gnl|canFam2|chr5 (48398300-48398136) | |
| 98-262, gnl|danRer3|chr6 (15252039-15251888) | |
| 98-262, gnl|dasNov1|scaffold_7725 (2143-2308) | |
| 98-262, gnl|echTel1|scaffold_314860 (15669-15506) | |
| 98-262, gnl|fr1|chrUn (222401140-222400986) | |
| 98-262, gnl|galGal2|chr8 (28431997-28432164) | |
| 98-262, gnl|hg17|chr1 (65025213-65025377) | |
| 98-262, gnl|Hg17|chr1 (65025382-65025210) | |
| 98-262, gnl|loxAfr1|scaffold_20657 (21859-22022) | |
| 98-262, gnl|mm7|chr4 (100540889-100541038) | |
| 98-262, gnl|Mm7|chr4 (100541043-100540882) | |
| 98-262, gnl|oryCun1|scaffold_206796 (123835-123999) | |
| 98-262, gnl|panTro1|chr1 (63365284-63365448) | |
| 98-262, gnl|rheMac2|chr1 (67619858-67620022) | |
| 98-262, gnl|rn3|chr5 (121821828-121821977) | |
| 98-262, gnl|tetNig1|chr1 (15747046-15746892) | |
| 98-262, gnl|xenTro1|scaffold_1 (1708696-1708544) | |
| 463-604, gnl|bosTau2|chr3 (54751516-54751656) | |
| 463-604, gnl|Hg17|chr1 (65022594-65022454) | |
| 463-604, gnl|Mm7|chr4 (100538382-100538242) | |
| 744-902, gnl|bosTau2|chr3 (54755804-54755963) | |
| 744-902, gnl|canFam2|chr5 (48403217-48403058) | |
| 744-902, gnl|danRer3|chr6 (15261035-15260877) | |
| 744-902, gnl|dasNov1|scaffold_10163 (28188-28050) | |
| 744-902, gnl|echTel1|scaffold_217050 (14610-14467) | |
| 744-902, gnl|fr1|chrUn (222402936-222402778) | |
| 744-902, gnl|galGal2|chr8 (28428089-28428248) | |
| 744-902, gnl|hg17|chr1 (65019150-65019309) | |
| 744-902, gnl|Hg17|chr1 (65019314-65019155) | |
| 744-902, gnl|loxAfr1|scaffold_20657 (14846-15005) | |
| 744-902, gnl|mm7|chr4 (100535449-100535608) | |
| 744-902, gnl|Mm7|chr4 (100535613-100535454) | |
| 744-902, gnl|monDom2|scaffold_40 (9944804-9944645) | |
| 744-902, gnl|oryCun1|scaffold_206796 (117964-118123) | |
| 744-902, gnl|panTro1|chr1 (63359160-63359319) | |
| 744-902, gnl|rheMac2|chr1 (67613824-67613983) | |
| 744-902, gnl|rn3|chr5 (121816242-121816401) | |
| 744-902, gnl|tetNig1|chr1 (15748831-15748673) | |
| 744-902, gnl|xenTro1|scaffold_1 (1715188-1715029) | |
| 996-1175, gnl|bosTau2|chr3 (54757238-54757418) | |
| 996-1175, gnl|canFam2|chr5 (48404743-48404575) | |
| 996-1175, gnl|danRer3|chr6 (15262297-15262129) | |
| 996-1175, gnl|dasNov1|scaffold_247641 (4026-4194) | |
| 996-1175, gnl|echTel1|scaffold_324241 (43019-43187) | |
| 996-1175, gnl|fr1|chrUn (222403747-222403583) | |
| 996-1175, gnl|galGal2|chr8 (28426242-28426410) | |
| 996-1175, gnl|hg17|chr1 (65017302-65017470) | |
| 996-1175, gnl|Hg17|chr1 (65017501-65017321) | |
| 996-1175, gnl|loxAfr1|scaffold_20657 (13331-13499) | |
| 996-1175, gnl|mm7|chr4 (100534188-100534356) | |
| 996-1175, gnl|Mm7|chr4 (100534387-100534207) | |
| 996-1175, gnl|monDom2|scaffold_40 (9946822-9946648) | |
| 996-1175, gnl|oryCun1|scaffold_206796 (117094-117358) | |
| 996-1175, gnl|panTro1|chr1 (63357313-63357481) | |
| 996-1175, gnl|rheMac2|chr1 (67611977-67612145) | |
| 996-1175, gnl|rn3|chr5 (121814999-121815167) | |
| 996-1175, gnl|tetNig1|chr1 (15749708-15749540) | |
| 996-1175, gnl|xenTro1|scaffold_1 (1718382-1718217) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |