Ss1.1-Mixn-0039h14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGACAGTTTCTGTTCCGGCCCTGGGACGTCACAAAGTTAAAGTCTGACACGGCTGCTGC AGCTGTGCGCCAGATGAATCCGCACATCCGAGTGACAAGCCACCAGAACCGTGTGGGCCC TGACACCGAGCGCATCTATGACGACGATTTCTTCCAAAACCTGGATGGCGTGGCCAATGC CCTGGATAACGTGGATGCTCGCATGTACATGGACCGCCGCTGTGTGTACTACCGTAAGCC ACTGCTGGAGTCGGGCACGCTGGGCACCAAGGGCAACGTGCAGGTGGTGATCCCCTTCCT GACAGAATCGTACAGCTCCAGCCAGGACCCGCCTGAGAAGTCCATCCCCATCTGCACACT GAAGAACTTCCCCAATGCCATCGAGCACACCCTGCAGTGGGCTCGAGACGAGTTCGAAGG CCTCTTCAAGCAGCCGGCAGAGAACGTCAACCAATACCTCACAGACCCCAAGTTTGTGGA GCGGACCCTGCGGCTGGCAGGCACCCAACCCCTGGAGGTGCTGGAGGCCGTGCAGCGCAG CCTGGTGCTGCAGCGGCCACAGACCTGGGCTGACTGCGTGACCTGGGCCTGCCACCACTG GCACACCCAGTACTCGAACAACATCCGGCAGCTGCTGCACAATTTCCCTCCCGACCAGCT CACAAGCTCGGGAGCTCCGTTCTGGTCTGGGCCCAAACGCTGTCCACACCCGCTCACCTT TGATGTCAACAACCCCCTGCATCTGGACTATGTGATGGCTGCCGCCAACCTGTTCGCCCA GACCTACGGGCTGACGGGCTCTCAGGACCGAGCTGCCGTGGCCACGCTCCTACAGTCTGT GCACGTCCCTGAGTTCACCCCCAAGTCTGGTGTCAAGATCCACGTCTCTGACCAGGAGCT GCAGAGTGCCAACGCCTCTGTGGATGACAGCCGTCTGGAAGAGCTCAAGGCCACACTGCC CAGTCCAGAGAAGCTCTCTGGGTTCAAGATGTACCCCATTGACTTTGAGAAGGATGATGA CAGCAACTTCCACATGGATTTCATCGTGGCTGCATCCAACCTCCGGGCAGAGAACTATGA CATTCCCCCTGCAGACCGGCACAAGAGCAAGCTGATCGCAGGGAAGATCATCCCGGCCAT TGCCACGACCACGGCTGCCGTGGTTGGCCTTGTGTGTTTAGAGCTGTATAAGGTGGTGCA GGGGCACCGACAGCTTGACTCCTACAAGAATGGTTTCCTCAACTTGGCCCTACCCTTCTT CGGCTTCTCTGAACCCCTTGCGGCACCCCGTCACCAGTACTATAACCAAGAGTGGACGTT GTGGGATCGCTTTGAGGTGCAGGGGCTGCAGCCTAACGGTGAGGAGATGACCCTCAAACA GTTCCTTGACTACTTCAAGACAGAGCATAAGCTGGAGATCACCATGCTGTCCCAGGGCGT GTCTATGCTCTACTCCTTCTTCATGCCAGCCGCCAAGCTCAAGGAACGGTTGGATCAGCC GATGACAGAGATCGTAAGCCGTGTGTCGAAGCGAAAGCTGGGCCGCCATGTGCGGGCGCT GGTGCTTGAGCTGTGCTGCAACGACGAGAGCGGCGAGGACGTCGAGGTCCCCTATGTACG ATACACCATCCGCTGACCCCTGTCCCCTGAGGCTGACTCCAGCCCCCTCCTCCAGACCTC TCCCAGCCCAGGGCCTCTGGCAGCCAAGCCTGGTGTTCCCTCCTCAGCCCCCGACCTGAA CCCCTCTTGCCGCCGCTTCCTACCTTGTTTGGAACCTGAATCCTAATAAAGAATTATTAA CCCAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGACAGTTTCTGTTCCGGCCCTGGGACGTCACAAAGTTAAAGTCTGACACGGCTGCTGC AGCTGTGCGCCAGATGAATCCGCACATCCGAGTGACAAGCCACCAGAACCGTGTGGGCCC TGACACCGAGCGCATCTATGACGACGATTTCTTCCAAAACCTGGATGGCGTGGCCAATGC CCTGGATAACGTGGATGCTCGCATGTACATGGACCGCCGCTGTGTGTACTACCGTAAGCC ACTGCTGGAGTCGGGCACGCTGGGCACCAAGGGCAACGTGCAGGTGGTGATCCCCTTCCT GACAGAATCGTACAGCTCCAGCCAGGACCCGCCTGAGAAGTCCATCCCCATCTGCACACT GAAGAACTTCCCCAATGCCATCGAGCACACCCTGCAGTGGGCTCGAGACGAGTTCGAAGG CCTCTTCAAGCAGCCGGCAGAGAACGTCAACCAATACCTCACAGACCCCAAGTTTGTGGA GCGGACCCTGCGGCTGGCAGGCACCCAACCCCTGGAGGTGCTGGAGGCCGTGCAGCGCAG CCTGGTGCTGCAGCGGCCACAGACCTGGGCTGACTGCGTGACCTGGGCCTGCCACCACTG GCACACCCAGTACTCGAACAACATCCGGCAGCTGCTGCACAATTTCCCTCCCGACCAGCT CACAAGCTCGGGAGCTCCGTTCTGGTCTGGGCCCAAACGCTGTCCACACCCGCTCACCTT TGATGTCAACAACCCCCTGCATCTGGACTATGTGATGGCTGCCGCCAACCTGTTCGCCCA GACCTACGGGCTGACGGGCTCTCAGGACCGAGCTGCCGTGGCCACGCTCCTACAGTCTGT GCACGTCCCTGAGTTCACCCCCAAGTCTGGTGTCAAGATCCACGTCTCTGACCAGGAGCT GCAGAGTGCCAACGCCTCTGTGGATGACAGCCGTCTGGAAGAGCTCAAGGCCACACTGCC CAGTCCAGAGAAGCTCTCTGGGTTCAAGATGTACCCCATTGACTTTGAGAAGGATGATGA CAGCAACTTCCACATGGATTTCATCGTGGCTGCATCCAACCTCCGGGCAGAGAACTATGA CATTCCCCCTGCAGACCGGCACAAGAGCAAGCTGATCGCAGGGAAGATCATCCCGGCCAT TGCCACGACCACGGCTGCCGTGGTTGGCCTTGTGTGTTTAGAGCTGTATAAGGTGGTGCA GGGGCACCGACAGCTTGACTCCTACAAGAATGGTTTCCTCAACTTGGCCCTACCCTTCTT CGGCTTCTCTGAACCCCTTGCGGCACCCCGTCACCAGTACTATAACCAAGAGTGGACGTT GTGGGATCGCTTTGAGGTGCAGGGGCTGCAGCCTAACGGTGAGGAGATGACCCTCAAACA GTTCCTTGACTACTTCAAGACAGAGCATAAGCTGGAGATCACCATGCTGTCCCAGGGCGT GTCTATGCTCTACTCCTTCTTCATGCCAGCCGCCAAGCTCAAGGAACGGTTGGATCAGCC GATGACAGAGATCGTAAGCCGTGTGTCGAAGCGAAAGCTGGGCCGCCATGTGCGGGCGCT GGTGCTTGAGCTGTGCTGCAACGACGAGAGCGGCGAGGACGTCGAGGTCCCCTATGTACG ATACACCATCCGCTGACCCCTGTCCCCTGAGGCTGACTCCAGCCCCCTCCTCCAGACCTC TCCCAGCCCAGGGCCTCTGGCAGCCAAGCCTGGTGTTCCCTCCTCAGCCCCCGACCTGAA CCCCTCTTGCCGCCGCTTCCTACCTTGTTTGGAACCTGAATCCTAATAAAGAATTATTAA CCCAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 488-1222, - strand, RNAz p=0.995392 | |
| 773-892, - strand, RNAz p=0.80424 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 488-1222, - strand, RNAz p=0.995392 | |
| 773-892, - strand, RNAz p=0.80424 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 201-397, gnl|bosTau2|chr27 (15975972-15976168) | |
| 201-397, gnl|canFam2|chrX (40746489-40746660) | |
| 201-397, gnl|danRer3|chr23 (21458798-21458949) | |
| 201-397, gnl|echTel1|scaffold_322644 (6773-6624) | |
| 201-397, gnl|fr1|chrUn (27202122-27202268) | |
| 201-397, gnl|galGal2|chr12 (2138258-2138111) | |
| 201-397, gnl|hg17|chrX (46821883-46822037) | |
| 201-397, gnl|Hg17|chrX (46821901-46822097) | |
| 201-397, gnl|loxAfr1|scaffold_45463 (7687-7848) | |
| 201-397, gnl|mm7|chrX (19109004-19109165) | |
| 201-397, gnl|Mm7|chrX (19109029-19109225) | |
| 201-397, gnl|monDom2|scaffold_134 (524583-524721) | |
| 201-397, gnl|oryCun1|scaffold_146069 (9127-8976) | |
| 201-397, gnl|panTro1|chrX (48402222-48402376) | |
| 201-397, gnl|rheMac2|chrX (45037199-45037353) | |
| 201-397, gnl|rn3|chrX (12938345-12938183) | |
| 201-397, gnl|tetNig1|chr9 (4838870-4839016) | |
| 451-658, gnl|bosTau2|chr27 (15978744-15978953) | |
| 451-658, gnl|Hg17|chrX (46825567-46825776) | |
| 451-658, gnl|Mm7|chrX (19111725-19111934) | |
| 734-927, gnl|bosTau2|chr27 (15979870-15980063) | |
| 734-927, gnl|Hg17|chrX (46826689-46826882) | |
| 734-927, gnl|Mm7|chrX (19112743-19112936) | |
| 1104-1297, gnl|bosTau2|chr27 (15981798-15981991) | |
| 1104-1297, gnl|Hg17|chrX (46828641-46828834) | |
| 1104-1297, gnl|Mm7|chrX (19114471-19114664) | |
| 1501-1804, gnl|bosTau2|chr27 (15983332-15983657) | |
| 1501-1804, gnl|Hg17|chrX (46830447-46830779) | |
| 1501-1804, gnl|Mm7|chrX (19115528-19115854) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 201-397, gnl|bosTau2|chr27 (15975972-15976168) | |
| 201-397, gnl|canFam2|chrX (40746489-40746660) | |
| 201-397, gnl|danRer3|chr23 (21458798-21458949) | |
| 201-397, gnl|echTel1|scaffold_322644 (6773-6624) | |
| 201-397, gnl|fr1|chrUn (27202122-27202268) | |
| 201-397, gnl|galGal2|chr12 (2138258-2138111) | |
| 201-397, gnl|hg17|chrX (46821883-46822037) | |
| 201-397, gnl|Hg17|chrX (46821901-46822097) | |
| 201-397, gnl|loxAfr1|scaffold_45463 (7687-7848) | |
| 201-397, gnl|mm7|chrX (19109004-19109165) | |
| 201-397, gnl|Mm7|chrX (19109029-19109225) | |
| 201-397, gnl|monDom2|scaffold_134 (524583-524721) | |
| 201-397, gnl|oryCun1|scaffold_146069 (9127-8976) | |
| 201-397, gnl|panTro1|chrX (48402222-48402376) | |
| 201-397, gnl|rheMac2|chrX (45037199-45037353) | |
| 201-397, gnl|rn3|chrX (12938345-12938183) | |
| 201-397, gnl|tetNig1|chr9 (4838870-4839016) | |
| 451-658, gnl|bosTau2|chr27 (15978744-15978953) | |
| 451-658, gnl|Hg17|chrX (46825567-46825776) | |
| 451-658, gnl|Mm7|chrX (19111725-19111934) | |
| 734-927, gnl|bosTau2|chr27 (15979870-15980063) | |
| 734-927, gnl|Hg17|chrX (46826689-46826882) | |
| 734-927, gnl|Mm7|chrX (19112743-19112936) | |
| 1104-1297, gnl|bosTau2|chr27 (15981798-15981991) | |
| 1104-1297, gnl|Hg17|chrX (46828641-46828834) | |
| 1104-1297, gnl|Mm7|chrX (19114471-19114664) | |
| 1501-1804, gnl|bosTau2|chr27 (15983332-15983657) | |
| 1501-1804, gnl|Hg17|chrX (46830447-46830779) | |
| 1501-1804, gnl|Mm7|chrX (19115528-19115854) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| fcc (0.593354) | |
| cga (0.558191) | |
| fce (0.543183) | |
| ton (0.526501) | |
| csp (0.483559) | |
| ebs (0.473205) | |
| pty (0.428143) | |
| col (0.390016) | |
| elu (0.385356) | |
| nep (0.36785) | |
| ill (0.351185) | |
| nco (0.323468) | |
| hyp (0.285673) | |
| cov (0.264306) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cli (0.152812) | |
| cag (0.151194) | |
| nca (0.136874) | |
| che (0.136314) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.593354) | |
| cga (0.558191) | |
| fce (0.543183) | |
| ton (0.526501) | |
| csp (0.483559) | |
| ebs (0.473205) | |
| pty (0.428143) | |
| col (0.390016) | |
| elu (0.385356) | |
| nep (0.36785) | |
| ill (0.351185) | |
| nco (0.323468) | |
| hyp (0.285673) | |
| cov (0.264306) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cli (0.152812) | |
| cag (0.151194) | |
| nca (0.136874) | |
| che (0.136314) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| nbm (0.0993246) |