Non-Coding RNA Search

Ss1.1-Mixn-0039i11.5

Sequence:


               
               GATGAGGAGGCGGGCACCCAGGGAGACCGAGAGTCTGGCAGAGCCCAGGAAGGGGGAGAA
AAGGGGAGAGACAGGTGGGGAACAGGGATGGGGCAGAGACCAGGCTACTTTTCCCTTAGG
TTTGCCAGCTGACAGTGCTGGCGGCTTCTCCCCTTGGCCCCAGCCCAGGCCCTCGCCCGC
CTCCCTGCCCACAATGGTCTCGTTTTGAGGTCTGCCAAGAGCAAGCCCAGATAAGGAGCA
AGCGAGCAGTGCCCCTCCCTCCCGACTGTCCCCAGCACTGGAATAAATTGTATGCAGTCC
TCGCGGCGGATACTGGGATGCTCGCTTTTCAAGGAACAAAAGCGTGCCTACTACAGAGCC
AGCCTCCCACCACACATCGCCATGGCCCTGGCCCTGCGACAAAGGCGCCACTGCCAGGCT
GCCAGCTGGGAGCACTGATTACGGGTGATGGACGAGAGAAAGAATGCTTCTGTCCCTGGA
TGAGAACCCCAAAGGATGGCTGTTTATGCATAAAATAACCCCTTGTTTTTGCCTGACGCT
TCCATCTCTCACTTTACCCCCACAATCATTTTACGTGCTATGGAGACAAAGAATTTGTTC
ATTTATATAGGGATGAAGAGTGTGCAGAGATTCAGAAGTGGCTTGTCACAGGAAGTTATC
TGTACTACTGGAGCTCCTTTCCCAGGAGCAAACCGTACATTATTTGCTTGAAATTAATAA
TGGTTCATCAGCCATTCATTACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAGGAGGCGGGCACCCAGGGAGACCGAGAGTCTGGCAGAGCCCAGGAAGGGGGAGAA
AAGGGGAGAGACAGGTGGGGAACAGGGATGGGGCAGAGACCAGGCTACTTTTCCCTTAGG
TTTGCCAGCTGACAGTGCTGGCGGCTTCTCCCCTTGGCCCCAGCCCAGGCCCTCGCCCGC
CTCCCTGCCCACAATGGTCTCGTTTTGAGGTCTGCCAAGAGCAAGCCCAGATAAGGAGCA
AGCGAGCAGTGCCCCTCCCTCCCGACTGTCCCCAGCACTGGAATAAATTGTATGCAGTCC
TCGCGGCGGATACTGGGATGCTCGCTTTTCAAGGAACAAAAGCGTGCCTACTACAGAGCC
AGCCTCCCACCACACATCGCCATGGCCCTGGCCCTGCGACAAAGGCGCCACTGCCAGGCT
GCCAGCTGGGAGCACTGATTACGGGTGATGGACGAGAGAAAGAATGCTTCTGTCCCTGGA
TGAGAACCCCAAAGGATGGCTGTTTATGCATAAAATAACCCCTTGTTTTTGCCTGACGCT
TCCATCTCTCACTTTACCCCCACAATCATTTTACGTGCTATGGAGACAAAGAATTTGTTC
ATTTATATAGGGATGAAGAGTGTGCAGAGATTCAGAAGTGGCTTGTCACAGGAAGTTATC
TGTACTACTGGAGCTCCTTTCCCAGGAGCAAACCGTACATTATTTGCTTGAAATTAATAA
TGGTTCATCAGCCATTCATTACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               87-187, + strand, RNAz p=0.959168

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-187, + strand, RNAz p=0.959168

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-339, gnl|bosTau2|chr5 (23029792-23030126)
               

               
               8-339, gnl|Hg17|chr12 (48783978-48783661)
               

               
               8-339, gnl|Mm7|chr15 (99702752-99702294)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-339, gnl|bosTau2|chr5 (23029792-23030126)
               

               
               8-339, gnl|Hg17|chr12 (48783978-48783661)
               

               
               8-339, gnl|Mm7|chr15 (99702752-99702294)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               pgl (0.118483)

	8-339, gnl\|bosTau2\|chr5 (23029792-23030126)
	8-339, gnl\|Hg17\|chr12 (48783978-48783661)
	8-339, gnl\|Mm7\|chr15 (99702752-99702294)