Non-Coding RNA Search

Ss1.1-Mixn-0039i23.5

Sequence:


               
               ACACCTTCCTGCCCGGAGCTGGTTTCTACTTGCCCGTCTGAGTTGAGTTTAAATATGCGT
ATGAAGAATTGCATTGACACCATTCGGTATTATAGACACAGACACCAACGGCACCATCCT
CAGGGCAGAGCCAGAATTCACATCCCTCGTCCAGAATTAAACACGTGGAGATTGTTACCT
ACACACACGCACATACATACACACACACACACACAGCTAGGACACACTGATCAAAAGGAT
CCTAGAGCCAAGTTGGCACCACGTGTTCCAGCACACACTCTCCGGGTTCTCATAACGGTG
GTCACTTAGTGCCAGGTGTGGCAACACTCCTTGTCAGAGGCCTACTAGACACCTCTTATT
AACCTGGGTCCAACCAATTTGGTACCAGACGACTGCTGAGTCTTAGCCCTGCCTGCCTGC
CTCCAGGTTGGCACACATCTGGCAGCAGGGGGCATTCTACACCACCCCTCTCTGGAGGTG
GTTTCTAGACACTTCAAAACCTTTGACACTTAAAACGCTAAGACATCTGCAAATGAACAA
TCAGACAAAGCATTGCTGGGAGTTGGGAATTTTGGAAACTCTGTTCACTTACCACCAAAT
TTATTGAAGCCACCACGGTCACTTCCGCTGGAGAAGACAAGTTAGAAGAAAGGACATGAA
GCTTCCAACGGCTACAAAAGGGCGGTTTTTGATTTTGTTCAACATTCCCCAAACATGGGT
AGGTGTTTTGGGAAAATGATAATACGAGTGGCTACGAAGATCCATTCCCCTTCCTGACCA
CCCCTTGTCTGACCTTTGAGCATGTCACACACACGTGTGCCATTTCTGACACGAATGTTT
AAGATTGTGCTTTAAAAGGTTATATATCTATTTCCTCTGGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCTTCCTGCCCGGAGCTGGTTTCTACTTGCCCGTCTGAGTTGAGTTTAAATATGCGT
ATGAAGAATTGCATTGACACCATTCGGTATTATAGACACAGACACCAACGGCACCATCCT
CAGGGCAGAGCCAGAATTCACATCCCTCGTCCAGAATTAAACACGTGGAGATTGTTACCT
ACACACACGCACATACATACACACACACACACACAGCTAGGACACACTGATCAAAAGGAT
CCTAGAGCCAAGTTGGCACCACGTGTTCCAGCACACACTCTCCGGGTTCTCATAACGGTG
GTCACTTAGTGCCAGGTGTGGCAACACTCCTTGTCAGAGGCCTACTAGACACCTCTTATT
AACCTGGGTCCAACCAATTTGGTACCAGACGACTGCTGAGTCTTAGCCCTGCCTGCCTGC
CTCCAGGTTGGCACACATCTGGCAGCAGGGGGCATTCTACACCACCCCTCTCTGGAGGTG
GTTTCTAGACACTTCAAAACCTTTGACACTTAAAACGCTAAGACATCTGCAAATGAACAA
TCAGACAAAGCATTGCTGGGAGTTGGGAATTTTGGAAACTCTGTTCACTTACCACCAAAT
TTATTGAAGCCACCACGGTCACTTCCGCTGGAGAAGACAAGTTAGAAGAAAGGACATGAA
GCTTCCAACGGCTACAAAAGGGCGGTTTTTGATTTTGTTCAACATTCCCCAAACATGGGT
AGGTGTTTTGGGAAAATGATAATACGAGTGGCTACGAAGATCCATTCCCCTTCCTGACCA
CCCCTTGTCTGACCTTTGAGCATGTCACACACACGTGTGCCATTTCTGACACGAATGTTT
AAGATTGTGCTTTAAAAGGTTATATATCTATTTCCTCTGGAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13242741|gb|AAB30805.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13242741|gb|AAB30805.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               156-270, - strand, RNAz p=0.597131
               

               
               349-504, + strand, RNAz p=0.974795

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-270, - strand, RNAz p=0.597131
               

               
               349-504, + strand, RNAz p=0.974795

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chr25 (23036668-23035792)
               

               
               1-888, gnl|Hg17|chr16 (31106224-31105365)
               

               
               1-888, gnl|Mm7|chr7 (124071562-124070684)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr25 (23036668-23035792)
               

               
               1-888, gnl|Hg17|chr16 (31106224-31105365)
               

               
               1-888, gnl|Mm7|chr7 (124071562-124070684)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	156-270, - strand, RNAz p=0.597131
	349-504, + strand, RNAz p=0.974795

	1-888, gnl\|bosTau2\|chr25 (23036668-23035792)
	1-888, gnl\|Hg17\|chr16 (31106224-31105365)
	1-888, gnl\|Mm7\|chr7 (124071562-124070684)