Non-Coding RNA Search

Ss1.1-Mixn-0039j18.5

Sequence:


               
               GGAGTGGCTACTGCTGTGCGGCTCAGGCGGCTTCCGTGGCAGCTAAGTACGCTGGCTCCC
AGAGTCCTACTGGGATGGCGAATGCAGCTCCCCCTGATGCTCCAGTCCCCACCCTGGCTG
TGCCTTTGGAGCAGCTCCGGCACCTAGCAGAGGAGCTTCGGTTGCTCCTTCCTGGAGTGC
GGGTCGGCGAAGCCCGGGAGACTACCAAGGAGTTTAATCGGGAGACCTTTTGGAGAAGAT
TCAATGAGGCAGCTGTGACAGTGTCCACGGAAGCCACTACTCTGACCGTAGTCTTTTCCC
GACTTCCACTGCCATCTCCTCAGGAAACCCAGAGATTCTGTGAACAAGTCCATGCTGCCA
TCAAGGCAATTATTGCAGCATACTATTCGCTTCCCAAGGATCAGGGAACCACCTTGAGAA
AGCTGGTAAGGAGTGCCACTCTTGACATTGTGGATGGCATGGCTCAGCTTGTGGAAATGC
TCTACGTCACTCCAACGCAGAGCCCTGAGAACCTCATTTCCTACAACAGTGTCTGGGATG
CGTGCCAGAAAGTGCCTAAAATCCCAAGAGATAACAAAGCTGCAGCCCTTTCAGTATTGA
CCAAGAGTGTGAATCTTGTAAAGGATGCACATGAGGAAATGGAGCAGGCCGTGGAAGAAT
GTGATCCTTACTGTGGCCTTTTGAATGACATTGAGGAGGACAACTCTGACAACCATGGAG
ATGAGGAGGGTATATTGGGATGTCCAAACAATCAGGACTCATATTGGTCCGAGGAGGATC
AGGAGCTCATAATCCCATGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAA
TCCGGCTCTCAGTGGCAGAGAATGGGAAGAAGGATCAGGTGGCCCAGCTGGATGACATTG
TGGACATTTCTGATGAGATCAGCCCTAGTGTGGATGATTTGGCTCTGAGCATATACCCAC
CTGTGTGCCACCTGACTGTGCGACTCAATGCTGCAAAACTTGTATCTGTTTTAGAGAAAG
CACTGGAAATTACAAAAGCAAGTCATGTGACCCCACAGCCAGAAGATAGCTGGATCCCTT
TACTTATTAATGCTGTTGATCATTGCATGAACAGAATCAAGGAGCTCACTAATGAAGTTG
AATTATGAGTTTTCAGGCTCATTCGTACTCTTCTCTGTCCCTTTCCTACTATCTCAGCCA
AGCTCTGATGTCTGCTTTTAGAGTGGGGCTAGGATGCTTTCTAGAACAAAACGGAGTTCC
TGTCTATACTTATTAATTAAGAGACACTATTACCAAAGATTATTGATTAGGTCATACTAG
TAATTATTTATAAACCATTTAAGTATGATATATTTTTCTGTGCTAGATACAAAAGATAAT
TGTATGAGTGTTTGTTCTTGAGTTGCCTCTCAGAGATTCCTGGGGAAGCTGCCCTTTTTG
CAGTAAAGTGTGTCATTTCTTTGTTAAAGATGTTGATAGTGTCAGTAAAATGCTTGGTGC
CAGTAAAATGCTTGATTAACTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTGGCTACTGCTGTGCGGCTCAGGCGGCTTCCGTGGCAGCTAAGTACGCTGGCTCCC
AGAGTCCTACTGGGATGGCGAATGCAGCTCCCCCTGATGCTCCAGTCCCCACCCTGGCTG
TGCCTTTGGAGCAGCTCCGGCACCTAGCAGAGGAGCTTCGGTTGCTCCTTCCTGGAGTGC
GGGTCGGCGAAGCCCGGGAGACTACCAAGGAGTTTAATCGGGAGACCTTTTGGAGAAGAT
TCAATGAGGCAGCTGTGACAGTGTCCACGGAAGCCACTACTCTGACCGTAGTCTTTTCCC
GACTTCCACTGCCATCTCCTCAGGAAACCCAGAGATTCTGTGAACAAGTCCATGCTGCCA
TCAAGGCAATTATTGCAGCATACTATTCGCTTCCCAAGGATCAGGGAACCACCTTGAGAA
AGCTGGTAAGGAGTGCCACTCTTGACATTGTGGATGGCATGGCTCAGCTTGTGGAAATGC
TCTACGTCACTCCAACGCAGAGCCCTGAGAACCTCATTTCCTACAACAGTGTCTGGGATG
CGTGCCAGAAAGTGCCTAAAATCCCAAGAGATAACAAAGCTGCAGCCCTTTCAGTATTGA
CCAAGAGTGTGAATCTTGTAAAGGATGCACATGAGGAAATGGAGCAGGCCGTGGAAGAAT
GTGATCCTTACTGTGGCCTTTTGAATGACATTGAGGAGGACAACTCTGACAACCATGGAG
ATGAGGAGGGTATATTGGGATGTCCAAACAATCAGGACTCATATTGGTCCGAGGAGGATC
AGGAGCTCATAATCCCATGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAA
TCCGGCTCTCAGTGGCAGAGAATGGGAAGAAGGATCAGGTGGCCCAGCTGGATGACATTG
TGGACATTTCTGATGAGATCAGCCCTAGTGTGGATGATTTGGCTCTGAGCATATACCCAC
CTGTGTGCCACCTGACTGTGCGACTCAATGCTGCAAAACTTGTATCTGTTTTAGAGAAAG
CACTGGAAATTACAAAAGCAAGTCATGTGACCCCACAGCCAGAAGATAGCTGGATCCCTT
TACTTATTAATGCTGTTGATCATTGCATGAACAGAATCAAGGAGCTCACTAATGAAGTTG
AATTATGAGTTTTCAGGCTCATTCGTACTCTTCTCTGTCCCTTTCCTACTATCTCAGCCA
AGCTCTGATGTCTGCTTTTAGAGTGGGGCTAGGATGCTTTCTAGAACAAAACGGAGTTCC
TGTCTATACTTATTAATTAAGAGACACTATTACCAAAGATTATTGATTAGGTCATACTAG
TAATTATTTATAAACCATTTAAGTATGATATATTTTTCTGTGCTAGATACAAAAGATAAT
TGTATGAGTGTTTGTTCTTGAGTTGCCTCTCAGAGATTCCTGGGGAAGCTGCCCTTTTTG
CAGTAAAGTGTGTCATTTCTTTGTTAAAGATGTTGATAGTGTCAGTAAAATGCTTGGTGC
CAGTAAAATGCTTGATTAACTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7Z519_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7Z519_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               646-928, gnl|bosTau2|chr10 (25451161-25450882)
               

               
               646-928, gnl|Hg17|chr15 (41270883-41271165)
               

               
               646-928, gnl|Mm7|chr2 (120753546-120753825)
               


               
               1037-1457, gnl|bosTau2|chr10 (25447273-25446853)
               

               
               1037-1457, gnl|Hg17|chr15 (41274217-41274633)
               

               
               1037-1457, gnl|Mm7|chr2 (120757248-120757696)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               646-928, gnl|bosTau2|chr10 (25451161-25450882)
               

               
               646-928, gnl|Hg17|chr15 (41270883-41271165)
               

               
               646-928, gnl|Mm7|chr2 (120753546-120753825)
               


               
               1037-1457, gnl|bosTau2|chr10 (25447273-25446853)
               

               
               1037-1457, gnl|Hg17|chr15 (41274217-41274633)
               

               
               1037-1457, gnl|Mm7|chr2 (120757248-120757696)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               isp (0.601504)
               

               
               thg (0.507164)
               

               
               spc (0.453463)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               ssp (0.271039)
               

               
               cbe (0.239234)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.601504)
               

               
               thg (0.507164)
               

               
               spc (0.453463)
               

               
               kid (0.389206)
               

               
               elu (0.385356)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               ssp (0.271039)
               

               
               cbe (0.239234)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	646-928, gnl\|bosTau2\|chr10 (25451161-25450882)
	646-928, gnl\|Hg17\|chr15 (41270883-41271165)
	646-928, gnl\|Mm7\|chr2 (120753546-120753825)

	1037-1457, gnl\|bosTau2\|chr10 (25447273-25446853)
	1037-1457, gnl\|Hg17\|chr15 (41274217-41274633)
	1037-1457, gnl\|Mm7\|chr2 (120757248-120757696)

	isp (0.601504)
	thg (0.507164)
	spc (0.453463)
	kid (0.389206)
	elu (0.385356)
	fco (0.314416)
	tbr (0.308356)
	ssp (0.271039)
	cbe (0.239234)
	nbm (0.198649)
	aor (0.195274)
	cmu (0.186393)
	sin (0.174948)
	fhi (0.169578)
	mga (0.160205)
	bfe (0.149858)
	spl (0.143184)
	ste (0.135208)
	pla (0.133672)
	cov (0.132153)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)
	cty (0.10408)
	eje (0.0988338)