Ss1.1-Mixn-0039k07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGAAAAATATCCGGCTGCCTAAAGAAGAAATTAAAAAACTTGACGTGGATGATATTAC TTTATGGTACAAGATGATCCTTCCTCCTCAGTTTGACAGATCAAAGAAGTATCCCTTGCT AATCCAAGTGTATGGTGGTCCCTGCAGTCAGAGTGTAAGGTCTGTATTCTCTATTAGATG GATATCTTATCTTGCAAGTAAGGAAGGGATAGTCATTGCCTTGGTGGACGGTCGAGGAAC AGCTTTCCAAGGTGACAAACTCCTGTATGCAGTGTATCGAAAGCTGGGTGTTTATGAAGT TGAGGACCAGATCACAGCTGTCAGAAAATTCATAGAAATGGGTTTCATTGATGAAAAAAG AATAGCCATATGGGGCTGGTCCTATGGAGGTTACGTTTCATCACTGGCCCTCGCCTCAGG AACTGGTCTTTTCAAATGCGGAATAGCAGTGGCTCCAGTCTCCAGCTGGGAATACTACGC ATCTATCTACACAGAGCGATTCATGGGCCTCCCAACAAAGGACGATAACCTCGAGCATTA CAAAAATTCAACTGTGATGGCAAGAGCAGAATATTTCAGAAATGTAGACTATCTTCTCAT CCACGGAACAGCAGATGATAATGTGCACTTTCAAAACTCAGCACAGATTGCTAAAGCTCT GGTTAATGCACAAGTGGATTTCCAGGCAATGTGGTACTCAGACCAGAACCACGGCATATC CGGCCTCTCCACGAAGCACTTATACACCCACATGACCCATTTCCTAAAGCAATGTTTCTC TCTGCCAGATTGAAAACGATGCAGGTACAAGATTGTATTACAATCTGAACACTCCCTATA AATGCCCCAGACCCCTGGCTTTTTACTCTTTATGCTCTTAAATGTTGGTATAAACAACTA ATGAATATTGTTCTAAAGGCTGACAGAAAATTCAGAGGACTCAGAAATTCATCTTAAATA TTGTTTACATTTTTCTGGCACCCTTGGAAGAAGAGAAAAGGAGGCCAGGACTTTTGCTTT GGACACAGGCAGTGTTGTAGCACTTGTTTGTCTGAAGGAAAAAAAAATAAAGGCAGAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGAAAAATATCCGGCTGCCTAAAGAAGAAATTAAAAAACTTGACGTGGATGATATTAC TTTATGGTACAAGATGATCCTTCCTCCTCAGTTTGACAGATCAAAGAAGTATCCCTTGCT AATCCAAGTGTATGGTGGTCCCTGCAGTCAGAGTGTAAGGTCTGTATTCTCTATTAGATG GATATCTTATCTTGCAAGTAAGGAAGGGATAGTCATTGCCTTGGTGGACGGTCGAGGAAC AGCTTTCCAAGGTGACAAACTCCTGTATGCAGTGTATCGAAAGCTGGGTGTTTATGAAGT TGAGGACCAGATCACAGCTGTCAGAAAATTCATAGAAATGGGTTTCATTGATGAAAAAAG AATAGCCATATGGGGCTGGTCCTATGGAGGTTACGTTTCATCACTGGCCCTCGCCTCAGG AACTGGTCTTTTCAAATGCGGAATAGCAGTGGCTCCAGTCTCCAGCTGGGAATACTACGC ATCTATCTACACAGAGCGATTCATGGGCCTCCCAACAAAGGACGATAACCTCGAGCATTA CAAAAATTCAACTGTGATGGCAAGAGCAGAATATTTCAGAAATGTAGACTATCTTCTCAT CCACGGAACAGCAGATGATAATGTGCACTTTCAAAACTCAGCACAGATTGCTAAAGCTCT GGTTAATGCACAAGTGGATTTCCAGGCAATGTGGTACTCAGACCAGAACCACGGCATATC CGGCCTCTCCACGAAGCACTTATACACCCACATGACCCATTTCCTAAAGCAATGTTTCTC TCTGCCAGATTGAAAACGATGCAGGTACAAGATTGTATTACAATCTGAACACTCCCTATA AATGCCCCAGACCCCTGGCTTTTTACTCTTTATGCTCTTAAATGTTGGTATAAACAACTA ATGAATATTGTTCTAAAGGCTGACAGAAAATTCAGAGGACTCAGAAATTCATCTTAAATA TTGTTTACATTTTTCTGGCACCCTTGGAAGAAGAGAAAAGGAGGCCAGGACTTTTGCTTT GGACACAGGCAGTGTTGTAGCACTTGTTTGTCTGAAGGAAAAAAAAATAAAGGCAGAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 731-848, - strand, RNAz p=0.724492 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 731-848, - strand, RNAz p=0.724492 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 130-324, gnl|bosTau2|chr2 (23150414-23150608) | |
| 130-324, gnl|canFam2|chr36 (10602906-10603117) | |
| 130-324, gnl|danRer3|chr22 (10066658-10066862) | |
| 130-324, gnl|dasNov1|scaffold_1019 (75521-75727) | |
| 130-324, gnl|echTel1|scaffold_141172 (520-731) | |
| 130-324, gnl|fr1|chrUn (173341752-173341539) | |
| 130-324, gnl|galGal2|chr7 (21935201-21934994) | |
| 130-324, gnl|hg17|chr2 (162870182-162870395) | |
| 130-324, gnl|Hg17|chr2 (162870380-162870186) | |
| 130-324, gnl|loxAfr1|scaffold_14034 (51931-52144) | |
| 130-324, gnl|mm7|chr2 (62448065-62448272) | |
| 130-324, gnl|Mm7|chr2 (62448263-62448069) | |
| 130-324, gnl|monDom2|scaffold_2 (56818172-56818380) | |
| 130-324, gnl|oryCun1|scaffold_172740 (46365-46158) | |
| 130-324, gnl|panTro1|chr13 (52266898-52267114) | |
| 130-324, gnl|rheMac2|chr12 (25760934-25761141) | |
| 130-324, gnl|rn3|chr3 (44369681-44369888) | |
| 130-324, gnl|tetNig1|chr3 (3295913-3295706) | |
| 379-479, gnl|bosTau2|chr2 (23163920-23164020) | |
| 379-479, gnl|canFam2|chr36 (10590103-10590231) | |
| 379-479, gnl|danRer3|chr22 (10064335-10064457) | |
| 379-479, gnl|dasNov1|scaffold_1019 (60815-60943) | |
| 379-479, gnl|echTel1|scaffold_312698 (53167-53267) | |
| 379-479, gnl|fr1|chrUn (173342124-173341998) | |
| 379-479, gnl|galGal2|chr7 (21938069-21937941) | |
| 379-479, gnl|hg17|chr2 (162856864-162856991) | |
| 379-479, gnl|Hg17|chr2 (162856984-162856884) | |
| 379-479, gnl|loxAfr1|scaffold_30666 (14917-15007) | |
| 379-479, gnl|mm7|chr2 (62435034-62435162) | |
| 379-479, gnl|Mm7|chr2 (62435155-62435055) | |
| 379-479, gnl|monDom2|scaffold_2 (56801761-56801889) | |
| 379-479, gnl|oryCun1|scaffold_172740 (60912-60784) | |
| 379-479, gnl|panTro1|chr13 (52253577-52253704) | |
| 379-479, gnl|rheMac2|chr12 (25747749-25747876) | |
| 379-479, gnl|rn3|chr3 (44357242-44357370) | |
| 379-479, gnl|tetNig1|chr3 (3296412-3296303) | |
| 379-479, gnl|xenTro1|scaffold_576 (794341-794210) | |
| 691-1080, gnl|bosTau2|chr2 (23167549-23167939) | |
| 691-1080, gnl|canFam2|chr36 (10586239-10586562) | |
| 691-1080, gnl|galGal2|chr7 (21945233-21944948) | |
| 691-1080, gnl|hg17|chr2 (162852649-162852984) | |
| 691-1080, gnl|Hg17|chr2 (162853098-162852711) | |
| 691-1080, gnl|loxAfr1|scaffold_5818 (14377-14733) | |
| 691-1080, gnl|mm7|chr2 (62431441-62431722) | |
| 691-1080, gnl|Mm7|chr2 (62431838-62431500) | |
| 691-1080, gnl|monDom2|scaffold_2 (56795820-56796193) | |
| 691-1080, gnl|oryCun1|scaffold_172740 (64659-64359) | |
| 691-1080, gnl|panTro1|chr13 (52249369-52249702) | |
| 691-1080, gnl|rheMac2|chr12 (25743558-25743889) | |
| 691-1080, gnl|rn3|chr3 (44353232-44353512) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-324, gnl|bosTau2|chr2 (23150414-23150608) | |
| 130-324, gnl|canFam2|chr36 (10602906-10603117) | |
| 130-324, gnl|danRer3|chr22 (10066658-10066862) | |
| 130-324, gnl|dasNov1|scaffold_1019 (75521-75727) | |
| 130-324, gnl|echTel1|scaffold_141172 (520-731) | |
| 130-324, gnl|fr1|chrUn (173341752-173341539) | |
| 130-324, gnl|galGal2|chr7 (21935201-21934994) | |
| 130-324, gnl|hg17|chr2 (162870182-162870395) | |
| 130-324, gnl|Hg17|chr2 (162870380-162870186) | |
| 130-324, gnl|loxAfr1|scaffold_14034 (51931-52144) | |
| 130-324, gnl|mm7|chr2 (62448065-62448272) | |
| 130-324, gnl|Mm7|chr2 (62448263-62448069) | |
| 130-324, gnl|monDom2|scaffold_2 (56818172-56818380) | |
| 130-324, gnl|oryCun1|scaffold_172740 (46365-46158) | |
| 130-324, gnl|panTro1|chr13 (52266898-52267114) | |
| 130-324, gnl|rheMac2|chr12 (25760934-25761141) | |
| 130-324, gnl|rn3|chr3 (44369681-44369888) | |
| 130-324, gnl|tetNig1|chr3 (3295913-3295706) | |
| 379-479, gnl|bosTau2|chr2 (23163920-23164020) | |
| 379-479, gnl|canFam2|chr36 (10590103-10590231) | |
| 379-479, gnl|danRer3|chr22 (10064335-10064457) | |
| 379-479, gnl|dasNov1|scaffold_1019 (60815-60943) | |
| 379-479, gnl|echTel1|scaffold_312698 (53167-53267) | |
| 379-479, gnl|fr1|chrUn (173342124-173341998) | |
| 379-479, gnl|galGal2|chr7 (21938069-21937941) | |
| 379-479, gnl|hg17|chr2 (162856864-162856991) | |
| 379-479, gnl|Hg17|chr2 (162856984-162856884) | |
| 379-479, gnl|loxAfr1|scaffold_30666 (14917-15007) | |
| 379-479, gnl|mm7|chr2 (62435034-62435162) | |
| 379-479, gnl|Mm7|chr2 (62435155-62435055) | |
| 379-479, gnl|monDom2|scaffold_2 (56801761-56801889) | |
| 379-479, gnl|oryCun1|scaffold_172740 (60912-60784) | |
| 379-479, gnl|panTro1|chr13 (52253577-52253704) | |
| 379-479, gnl|rheMac2|chr12 (25747749-25747876) | |
| 379-479, gnl|rn3|chr3 (44357242-44357370) | |
| 379-479, gnl|tetNig1|chr3 (3296412-3296303) | |
| 379-479, gnl|xenTro1|scaffold_576 (794341-794210) | |
| 691-1080, gnl|bosTau2|chr2 (23167549-23167939) | |
| 691-1080, gnl|canFam2|chr36 (10586239-10586562) | |
| 691-1080, gnl|galGal2|chr7 (21945233-21944948) | |
| 691-1080, gnl|hg17|chr2 (162852649-162852984) | |
| 691-1080, gnl|Hg17|chr2 (162853098-162852711) | |
| 691-1080, gnl|loxAfr1|scaffold_5818 (14377-14733) | |
| 691-1080, gnl|mm7|chr2 (62431441-62431722) | |
| 691-1080, gnl|Mm7|chr2 (62431838-62431500) | |
| 691-1080, gnl|monDom2|scaffold_2 (56795820-56796193) | |
| 691-1080, gnl|oryCun1|scaffold_172740 (64659-64359) | |
| 691-1080, gnl|panTro1|chr13 (52249369-52249702) | |
| 691-1080, gnl|rheMac2|chr12 (25743558-25743889) | |
| 691-1080, gnl|rn3|chr3 (44353232-44353512) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| fat (0.442282) | |
| sme (0.305437) | |
| ski (0.29347) | |
| liv (0.292569) | |
| csk (0.281492) | |
| lyg (0.266205) | |
| tes (0.207814) | |
| rec (0.17307) | |
| lun (0.150489) | |
| lin (0.145603) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| jca (0.11396) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.442282) | |
| sme (0.305437) | |
| ski (0.29347) | |
| liv (0.292569) | |
| csk (0.281492) | |
| lyg (0.266205) | |
| tes (0.207814) | |
| rec (0.17307) | |
| lun (0.150489) | |
| lin (0.145603) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| jca (0.11396) |