Ss1.1-Mixn-0039l12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGGCGGAGTGGAGGGGTAACAAGATGGCGACCGAGACGGTGGAGCTCCATAAGCTGAA GCTTGCTGAACTAAAGCAGGAGTGTCTTGCTCGTGGTTTGGAGACCAAGGGAATAAAACA AGATCTCATCAACAGGCTCCAGGCATATCTTGAAGAGCATGCTGAAGAGGAGGCAAATGA AGAAGATGTACTGGGAGATGAAACAGAGGAAGAAGAGCCGAAGCCCATAGAACTGCCTGT CAAAGAGGAAGAACCTCCTGAAAAAACTGTTGATGTGGCAGCAGAGAAAAAAGTGGTAAA AATTACATCTGAAATGCCACAGACCGAGAGGATGCAGAAGAGAGCTGAACGATTCAATGT ACCTGTGAGCTTGGAAAGTAAGAAAGCTGCCCGGGCAGCTAGATTTGGGATTTCTTCAGT TCCATCAAAAGGCCTGTCGTCTGACACCAAGCCTATGGTAAACCTGGATAAGCTAAAAGA AAGAGCTCAAAGATTTGGTTTAAATGTCTCTTCAATTTCCAGAAAGTCTGAGGATGATGA GAAGCTGAAAAAAAGGAAGGAGCGATTTGGGATTGTCACAAGTTCAGCTGGAACAGGAAC CACAGAGGATACAGAGGCAAAGAAGAGGAAAAGAGCAGAGCGCTTTGGGATTGCCTGATG AAAAGCTCTTGATGCTTTCCATTCTCCAATGGTTTCCATCTCTCTGACTCTTCCTGGTCA CATGTATACCTAAATGCACAGCCATGTGCCTAGGTCCTGCCTTGCAATGAGGGAGCATGT ACCTCAGGTACATTCGTGAACTCCAGCAGCAATTTGACTTATTGCTGTTCCAACTTTAAG GTTGTTGTTGTTGTGTTGTTTTTTAATTATTATTTTGCTTGTTAATAAAAAAATAGAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGGCGGAGTGGAGGGGTAACAAGATGGCGACCGAGACGGTGGAGCTCCATAAGCTGAA GCTTGCTGAACTAAAGCAGGAGTGTCTTGCTCGTGGTTTGGAGACCAAGGGAATAAAACA AGATCTCATCAACAGGCTCCAGGCATATCTTGAAGAGCATGCTGAAGAGGAGGCAAATGA AGAAGATGTACTGGGAGATGAAACAGAGGAAGAAGAGCCGAAGCCCATAGAACTGCCTGT CAAAGAGGAAGAACCTCCTGAAAAAACTGTTGATGTGGCAGCAGAGAAAAAAGTGGTAAA AATTACATCTGAAATGCCACAGACCGAGAGGATGCAGAAGAGAGCTGAACGATTCAATGT ACCTGTGAGCTTGGAAAGTAAGAAAGCTGCCCGGGCAGCTAGATTTGGGATTTCTTCAGT TCCATCAAAAGGCCTGTCGTCTGACACCAAGCCTATGGTAAACCTGGATAAGCTAAAAGA AAGAGCTCAAAGATTTGGTTTAAATGTCTCTTCAATTTCCAGAAAGTCTGAGGATGATGA GAAGCTGAAAAAAAGGAAGGAGCGATTTGGGATTGTCACAAGTTCAGCTGGAACAGGAAC CACAGAGGATACAGAGGCAAAGAAGAGGAAAAGAGCAGAGCGCTTTGGGATTGCCTGATG AAAAGCTCTTGATGCTTTCCATTCTCCAATGGTTTCCATCTCTCTGACTCTTCCTGGTCA CATGTATACCTAAATGCACAGCCATGTGCCTAGGTCCTGCCTTGCAATGAGGGAGCATGT ACCTCAGGTACATTCGTGAACTCCAGCAGCAATTTGACTTATTGCTGTTCCAACTTTAAG GTTGTTGTTGTTGTGTTGTTTTTTAATTATTATTTTGCTTGTTAATAAAAAAATAGAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 12-170, - strand, RNAz p=0.848195 | |
| 290-409, + strand, RNAz p=0.577155 | |
| 734-874, + strand, RNAz p=0.920009 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 12-170, - strand, RNAz p=0.848195 | |
| 290-409, + strand, RNAz p=0.577155 | |
| 734-874, + strand, RNAz p=0.920009 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_033082, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 12-547, gnl|bosTau2|chr5 (35106992-35107527) | |
| 12-547, gnl|Hg17|chr7 (98685784-98685268) | |
| 12-547, gnl|Mm7|chr19 (23373962-23374475) | |
| 615-908, gnl|bosTau2|chr5 (35418878-35418581) | |
| 615-908, gnl|canFam2|chr10 (3134967-3135221) | |
| 615-908, gnl|canFam2|chr10 (3134853-3135163) | |
| 615-908, gnl|dasNov1|scaffold_56187 (12474-12751) | |
| 615-908, gnl|dasNov1|scaffold_56187 (12358-12692) | |
| 615-908, gnl|hg17|chr12 (54437209-54437507) | |
| 615-908, gnl|Hg17|chr12 (54437606-54437318) | |
| 615-908, gnl|hg17|chr8 (102609810-102610069) | |
| 615-908, gnl|mm7|chr10 (128379508-128379197) | |
| 615-908, gnl|Mm7|chr10 (128379099-128379397) | |
| 615-908, gnl|mm7|chr19 (23374879-23374607) | |
| 615-908, gnl|monDom2|scaffold_34 (22237388-22237106) | |
| 615-908, gnl|monDom2|scaffold_628 (867-1215) | |
| 615-908, gnl|oryCun1|scaffold_172883 (3810-3563) | |
| 615-908, gnl|oryCun1|scaffold_172883 (3915-3621) | |
| 615-908, gnl|panTro1|chr10 (55663333-55663630) | |
| 615-908, gnl|panTro1|chr7 (104966701-104966959) | |
| 615-908, gnl|rheMac2|chr11 (52815154-52815462) | |
| 615-908, gnl|rheMac2|chr8 (104034183-104034442) | |
| 615-908, gnl|rn3|chr1 (109115274-109114962) | |
| 615-908, gnl|rn3|chr7 (2176182-2175798) | |
| 797-903, gnl|bosTau2|chr25 (30413296-30413186) | |
| 797-903, gnl|Hg17|chr8 (102609927-102609833) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-547, gnl|bosTau2|chr5 (35106992-35107527) | |
| 12-547, gnl|Hg17|chr7 (98685784-98685268) | |
| 12-547, gnl|Mm7|chr19 (23373962-23374475) | |
| 615-908, gnl|bosTau2|chr5 (35418878-35418581) | |
| 615-908, gnl|canFam2|chr10 (3134967-3135221) | |
| 615-908, gnl|canFam2|chr10 (3134853-3135163) | |
| 615-908, gnl|dasNov1|scaffold_56187 (12474-12751) | |
| 615-908, gnl|dasNov1|scaffold_56187 (12358-12692) | |
| 615-908, gnl|hg17|chr12 (54437209-54437507) | |
| 615-908, gnl|Hg17|chr12 (54437606-54437318) | |
| 615-908, gnl|hg17|chr8 (102609810-102610069) | |
| 615-908, gnl|mm7|chr10 (128379508-128379197) | |
| 615-908, gnl|Mm7|chr10 (128379099-128379397) | |
| 615-908, gnl|mm7|chr19 (23374879-23374607) | |
| 615-908, gnl|monDom2|scaffold_34 (22237388-22237106) | |
| 615-908, gnl|monDom2|scaffold_628 (867-1215) | |
| 615-908, gnl|oryCun1|scaffold_172883 (3810-3563) | |
| 615-908, gnl|oryCun1|scaffold_172883 (3915-3621) | |
| 615-908, gnl|panTro1|chr10 (55663333-55663630) | |
| 615-908, gnl|panTro1|chr7 (104966701-104966959) | |
| 615-908, gnl|rheMac2|chr11 (52815154-52815462) | |
| 615-908, gnl|rheMac2|chr8 (104034183-104034442) | |
| 615-908, gnl|rn3|chr1 (109115274-109114962) | |
| 615-908, gnl|rn3|chr7 (2176182-2175798) | |
| 797-903, gnl|bosTau2|chr25 (30413296-30413186) | |
| 797-903, gnl|Hg17|chr8 (102609927-102609833) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| sme (0.610874) | |
| tra (0.492368) | |
| pgl (0.473934) | |
| ece (0.45861) | |
| spc (0.453463) | |
| isp (0.451128) | |
| lin (0.436808) | |
| amn (0.417711) | |
| hea (0.408998) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| fty (0.351679) | |
| med (0.348756) | |
| vin (0.332557) | |
| cte (0.29274) | |
| liv (0.292569) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| pty (0.285429) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ova (0.258264) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| duo (0.172801) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.610874) | |
| tra (0.492368) | |
| pgl (0.473934) | |
| ece (0.45861) | |
| spc (0.453463) | |
| isp (0.451128) | |
| lin (0.436808) | |
| amn (0.417711) | |
| hea (0.408998) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| fty (0.351679) | |
| med (0.348756) | |
| vin (0.332557) | |
| cte (0.29274) | |
| liv (0.292569) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| pty (0.285429) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ova (0.258264) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| duo (0.172801) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) |