Non-Coding RNA Search

Ss1.1-Mixn-0039m08.5

Sequence:


               
               GGACTCCACAATCTCAGCCTGAAGGTGGGGCTCCAAATTTTCCATCCTGATGTCTTCCCG
GGACCGTCCACCTTTAAGCAGATCCAGGACCACCTCATTGATGACACTGCCCCCAAGGTT
ACTGAGAAAAAGAAAGATGCTTCTGGGGGACTTGGCCCTGTGGTTCTCCAGGGTCTGGCG
GTCCAGCTGTGGCCCGAGGACCTCCAGCAGTTCCGGGTGCAGCTTCTCGGCCTCATCTAA
AATGAACAGGGTCTGGTGGCAGCGCTCCTGCGTCTTCCTGATCTGGCCCGTCAGCTGCTC
CTTGTACTGGTCCACATACTTGGGGTGAGGGAAGTGCAGCGTGGCTATGAACACCTGGAC
GCAGTTGCTCCTCAGCCCATCCCGGAACAGGTTCTCCGCCAGCAGCCGAGCCACGAAGTT
CTTGCCTGTGCCAGACGAGCCATGGAACGACAGAGCCAGGGCCTTGTCTGGCTGGGGCAG
CTCTAGGTAGCCCCTTACTGCCGCCAAGACCAGCTCCCGGGCCAGGTGCTGGCCGTGCAG
TCGCACGCGCAGGTCGGCCTCTAGGCCTGTGAAGTTGTTGATGATCCTACAGTCCCCACT
GTCGCAGCAGTCCTGGAAGCTGCAGTACCACGTGGTCAGGATATCCAGGTACTGCTGGCC
CAGCAGGGGAAGACTCCAGCCCAGGGGCCGCGCGGGCGCTTCCTCATCCTTCCCACAGGC
CTCGGGCCACAGGCGGCAGCTGAAGAGGGCCCAGTAGCGTCTGGAGAGGGCGCCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTCCACAATCTCAGCCTGAAGGTGGGGCTCCAAATTTTCCATCCTGATGTCTTCCCG
GGACCGTCCACCTTTAAGCAGATCCAGGACCACCTCATTGATGACACTGCCCCCAAGGTT
ACTGAGAAAAAGAAAGATGCTTCTGGGGGACTTGGCCCTGTGGTTCTCCAGGGTCTGGCG
GTCCAGCTGTGGCCCGAGGACCTCCAGCAGTTCCGGGTGCAGCTTCTCGGCCTCATCTAA
AATGAACAGGGTCTGGTGGCAGCGCTCCTGCGTCTTCCTGATCTGGCCCGTCAGCTGCTC
CTTGTACTGGTCCACATACTTGGGGTGAGGGAAGTGCAGCGTGGCTATGAACACCTGGAC
GCAGTTGCTCCTCAGCCCATCCCGGAACAGGTTCTCCGCCAGCAGCCGAGCCACGAAGTT
CTTGCCTGTGCCAGACGAGCCATGGAACGACAGAGCCAGGGCCTTGTCTGGCTGGGGCAG
CTCTAGGTAGCCCCTTACTGCCGCCAAGACCAGCTCCCGGGCCAGGTGCTGGCCGTGCAG
TCGCACGCGCAGGTCGGCCTCTAGGCCTGTGAAGTTGTTGATGATCCTACAGTCCCCACT
GTCGCAGCAGTCCTGGAAGCTGCAGTACCACGTGGTCAGGATATCCAGGTACTGCTGGCC
CAGCAGGGGAAGACTCCAGCCCAGGGGCCGCGCGGGCGCTTCCTCATCCTTCCCACAGGC
CTCGGGCCACAGGCGGCAGCTGAAGAGGGCCCAGTAGCGTCTGGAGAGGGCGCCGGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55662024|emb|CAH70929.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55662024|emb|CAH70929.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               451-568, + strand, RNAz p=0.925126

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-568, + strand, RNAz p=0.925126

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-134, gnl|bosTau2|chr16 (42753234-42753101)
               

               
               1-134, gnl|canFam2|chr7 (23705360-23705257)
               

               
               1-134, gnl|danRer3|chr8 (9038797-9038876)
               

               
               1-134, gnl|echTel1|scaffold_233083 (5229-5332)
               

               
               1-134, gnl|fr1|chrUn (201160988-201161077)
               

               
               1-134, gnl|galGal2|chr8 (6253879-6253776)
               

               
               1-134, gnl|hg17|chr1 (175794856-175794959)
               

               
               1-134, gnl|Hg17|chr1 (175795005-175794872)
               

               
               1-134, gnl|loxAfr1|scaffold_3229 (42997-43098)
               

               
               1-134, gnl|mm7|chr1 (156619222-156619124)
               

               
               1-134, gnl|Mm7|chr1 (156619076-156619209)
               

               
               1-134, gnl|monDom2|scaffold_16 (31839818-31839907)
               

               
               1-134, gnl|oryCun1|scaffold_85281 (318-213)
               

               
               1-134, gnl|panTro1|chr1 (158187392-158187495)
               

               
               1-134, gnl|rheMac2|chr1 (191645093-191644990)
               

               
               1-134, gnl|rn3|chr13 (71865308-71865203)
               

               
               1-134, gnl|tetNig1|chr1 (11032984-11032897)
               

               
               1-134, gnl|xenTro1|scaffold_82 (41049-40958)
               


               
               300-568, gnl|bosTau2|chr11 (79578828-79579096)
               

               
               300-568, gnl|Hg17|chr9 (127576131-127576399)
               

               
               300-568, gnl|Mm7|chr2 (32766248-32765980)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr16 (42753234-42753101)
               

               
               1-134, gnl|canFam2|chr7 (23705360-23705257)
               

               
               1-134, gnl|danRer3|chr8 (9038797-9038876)
               

               
               1-134, gnl|echTel1|scaffold_233083 (5229-5332)
               

               
               1-134, gnl|fr1|chrUn (201160988-201161077)
               

               
               1-134, gnl|galGal2|chr8 (6253879-6253776)
               

               
               1-134, gnl|hg17|chr1 (175794856-175794959)
               

               
               1-134, gnl|Hg17|chr1 (175795005-175794872)
               

               
               1-134, gnl|loxAfr1|scaffold_3229 (42997-43098)
               

               
               1-134, gnl|mm7|chr1 (156619222-156619124)
               

               
               1-134, gnl|Mm7|chr1 (156619076-156619209)
               

               
               1-134, gnl|monDom2|scaffold_16 (31839818-31839907)
               

               
               1-134, gnl|oryCun1|scaffold_85281 (318-213)
               

               
               1-134, gnl|panTro1|chr1 (158187392-158187495)
               

               
               1-134, gnl|rheMac2|chr1 (191645093-191644990)
               

               
               1-134, gnl|rn3|chr13 (71865308-71865203)
               

               
               1-134, gnl|tetNig1|chr1 (11032984-11032897)
               

               
               1-134, gnl|xenTro1|scaffold_82 (41049-40958)
               


               
               300-568, gnl|bosTau2|chr11 (79578828-79579096)
               

               
               300-568, gnl|Hg17|chr9 (127576131-127576399)
               

               
               300-568, gnl|Mm7|chr2 (32766248-32765980)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               med (0.116252)

	1-134, gnl\|bosTau2\|chr16 (42753234-42753101)
	1-134, gnl\|canFam2\|chr7 (23705360-23705257)
	1-134, gnl\|danRer3\|chr8 (9038797-9038876)
	1-134, gnl\|echTel1\|scaffold_233083 (5229-5332)
	1-134, gnl\|fr1\|chrUn (201160988-201161077)
	1-134, gnl\|galGal2\|chr8 (6253879-6253776)
	1-134, gnl\|hg17\|chr1 (175794856-175794959)
	1-134, gnl\|Hg17\|chr1 (175795005-175794872)
	1-134, gnl\|loxAfr1\|scaffold_3229 (42997-43098)
	1-134, gnl\|mm7\|chr1 (156619222-156619124)
	1-134, gnl\|Mm7\|chr1 (156619076-156619209)
	1-134, gnl\|monDom2\|scaffold_16 (31839818-31839907)
	1-134, gnl\|oryCun1\|scaffold_85281 (318-213)
	1-134, gnl\|panTro1\|chr1 (158187392-158187495)
	1-134, gnl\|rheMac2\|chr1 (191645093-191644990)
	1-134, gnl\|rn3\|chr13 (71865308-71865203)
	1-134, gnl\|tetNig1\|chr1 (11032984-11032897)
	1-134, gnl\|xenTro1\|scaffold_82 (41049-40958)

	300-568, gnl\|bosTau2\|chr11 (79578828-79579096)
	300-568, gnl\|Hg17\|chr9 (127576131-127576399)
	300-568, gnl\|Mm7\|chr2 (32766248-32765980)