Non-Coding RNA Search

Ss1.1-Mixn-0039o15.5

Sequence:


               
               GGCTTTTGCGGAAGCTGCGGCAGCTGGAGGAGCAGGTGAAGCTGATCCCGGTGCTCCAGG
TGAAGCTGTCGGTGCTGCAGGAGGAAAAGCGACAGCTCACAGTGCAGCTCAAGAGCCAGA
AATTCCTAGGCCACCCCACAGGGGCCCGGGGCCGCAGCGAGCTCTGCCTAGACCTCCCCG
AGGCCCCTGAGGACCCGGTGGCACTTGAGACCCGGAGCGTGGGCACCTGGGTCCGAGAGC
GGGACTTGGGCATGCCCGATGGGGAGGCTGCTCTTGCTGCTAAGGTGGCCGTCCTGGAGA
CCCAGCTCAAGAAAGCGCTCCAGGAGCTGCAGGCAGCTCAGGCCCGGCAAGCTGACCTTC
AGCCCCAGGCCTGGCCGCCACCAGACAGCCCAGTCCGTGTGGACACCGTCCGAGTGGTGG
AGGGGCCACGGGAGGTGGAGGTCGTGGCCAGCACAGCTGCCGGGGCCCCTGCCCAGCGGG
CCCAGAGTCTGGAGCCCTACGGGGCCGGGCTGCGGGCCTTGGCGACATCCAGTGGAGCTG
AGAGCCCCACTGTGTTCTGCAGCCATGAGGTGGTGGAGACAGTGTTCCCAGCACCTGCTG
CATCCACCAGCAACGTCCAACTGGTGAAGAAGATCAGCATCACAGAGCGCAGCTGTGATG
GGGCAGCAGGCACTGAGGACACAGCAGTGAACGTGACTGACAAAAGCGCCTGCAATAAAC
AAACAAGAGACCACCAGAAAGAAGTGAAGGAAAATTATTTCAGAGAGCTAAAAAAACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTTGCGGAAGCTGCGGCAGCTGGAGGAGCAGGTGAAGCTGATCCCGGTGCTCCAGG
TGAAGCTGTCGGTGCTGCAGGAGGAAAAGCGACAGCTCACAGTGCAGCTCAAGAGCCAGA
AATTCCTAGGCCACCCCACAGGGGCCCGGGGCCGCAGCGAGCTCTGCCTAGACCTCCCCG
AGGCCCCTGAGGACCCGGTGGCACTTGAGACCCGGAGCGTGGGCACCTGGGTCCGAGAGC
GGGACTTGGGCATGCCCGATGGGGAGGCTGCTCTTGCTGCTAAGGTGGCCGTCCTGGAGA
CCCAGCTCAAGAAAGCGCTCCAGGAGCTGCAGGCAGCTCAGGCCCGGCAAGCTGACCTTC
AGCCCCAGGCCTGGCCGCCACCAGACAGCCCAGTCCGTGTGGACACCGTCCGAGTGGTGG
AGGGGCCACGGGAGGTGGAGGTCGTGGCCAGCACAGCTGCCGGGGCCCCTGCCCAGCGGG
CCCAGAGTCTGGAGCCCTACGGGGCCGGGCTGCGGGCCTTGGCGACATCCAGTGGAGCTG
AGAGCCCCACTGTGTTCTGCAGCCATGAGGTGGTGGAGACAGTGTTCCCAGCACCTGCTG
CATCCACCAGCAACGTCCAACTGGTGAAGAAGATCAGCATCACAGAGCGCAGCTGTGATG
GGGCAGCAGGCACTGAGGACACAGCAGTGAACGTGACTGACAAAAGCGCCTGCAATAAAC
AAACAAGAGACCACCAGAAAGAAGTGAAGGAAAATTATTTCAGAGAGCTAAAAAAACTGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               6-125, - strand, RNAz p=0.633461
               

               
               206-405, - strand, RNAz p=0.917028
               

               
               446-565, - strand, RNAz p=0.878156

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-125, - strand, RNAz p=0.633461
               

               
               206-405, - strand, RNAz p=0.917028
               

               
               446-565, - strand, RNAz p=0.878156

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               341-666, - strand, RNAmicro p=0.996595
               

               
               346-451, + strand, RNAmicro p=0.995212

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               341-666, - strand, RNAmicro p=0.996595
               

               
               346-451, + strand, RNAmicro p=0.995212

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-670, gnl|bosTau2|chr7 (11082822-11082158)
               

               
               6-670, gnl|Hg17|chr19 (11165170-11164506)
               

               
               6-670, gnl|Mm7|chr9 (21676707-21676034)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-670, gnl|bosTau2|chr7 (11082822-11082158)
               

               
               6-670, gnl|Hg17|chr19 (11165170-11164506)
               

               
               6-670, gnl|Mm7|chr9 (21676707-21676034)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	6-125, - strand, RNAz p=0.633461
	206-405, - strand, RNAz p=0.917028
	446-565, - strand, RNAz p=0.878156

	341-666, - strand, RNAmicro p=0.996595
	346-451, + strand, RNAmicro p=0.995212

	6-670, gnl\|bosTau2\|chr7 (11082822-11082158)
	6-670, gnl\|Hg17\|chr19 (11165170-11164506)
	6-670, gnl\|Mm7\|chr9 (21676707-21676034)