Ss1.1-Mus1-POSM0100001_E10.3.233
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCGCCACGACTGCGACCTGCTGCGGGAACAGTATGAGGAGGAGCAGGAATCCAAGGC CGAGCTGCAGAGGGCGCTGTCCAAGGCCAACACAGAGGTTGCCCAGTGGAGGACCAAGTA CGAGACGGACGCCATCCAGCGCACCGAGGAGCTGGAGGAGGCCAAGAAGAAACTGGCCCA GAGGCTGCAGGCAGCTGAGGAACACGTGGAAGCTGTGAACGCCAAGTGTGCTTCCCTCGA GAAGACGAAGCAGCGGCTCCAGAATGAGGTCGAGGACCTCATGCTCGATGTGGAGAGGAC CAATGCTGCCTGCGCGGCTCTCGACAAAAAGCAGAGGAACTTTGATAAGATCCTAGCAGA GTGGAAACAAAAGTACGAAGAAACTCATGCTGAACTTGAAGCCTCTCAGAAGGAGTCCCG CTCCCTTAGCACAGAGCTGTTCAAGGTGAAGAATGCTTATGAGGAGTCCTTAGACCAACT AGAAACCCTGAAGCGTGAAAATAAGAATTTGCAACAGGAGATTTCTGACCTCACGGAGCA GATTGCAGAAGGAGGGAAACGTATCCACGAACTGGAGAAAATAAAGAAACAAGTGGAACA AGAAAAGTCTGAGATTCAGGCTGCTTTAGAGGAAGCAGAGGCATCTCTTGAACATGAAGA AGGAAAGATTCTGCGCATCCAGCTGGAGTTGAACCAAGTCAAGTCGGAGGTGGACAGGAA AATCGCTGAGAAGGATGAGGAAATCGACCAGCTGAAGAGGAACCACGTCAGAGTCGTGGA GTCCATGCAGAGCATGCTGGATGCTGAGATCCGGAGCAGAAACGACGCCATCAGGCTCAA GAAGAAGATGGAGGGAGACCTCAATGAAATGGAAATCCAGCTGAACCACGCCAACCGCAT GGCTGCCGAGGCCCTGAGGAACTACAGGAACACCCAAGGCATCCTCAAGGACACCCAGAT CCACCTGGATGACGCTCTCAGGAGCCAAGAGGACCTGAAGGAGCAGCTGGCCATGGTGGA GCGCAGAGCCAACCTGCTGCAGGCTGAGATTGAGGAGCTGCGGGCCACGCTGGAGCAGAC AGAGAGGAGTAGGAAAGTCGCAGAACAGGAGCTCCTGGATGCCAGTGAGCGTGTCCAGCT CCTGCACACCCAGAATACCAGCCTGATCAACACCAAGAAGAAGCTGGAGACAGACATCTC CCAAATCCAGGGAGAGATGGAGGACATTATTCAGGAAGCTCGCAACGCAGAAGAAAAGGC CAAGAAGGCCATCACTGATGCGGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGACAC CAGCGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCA CCGTCTGGACGAGGCTGAGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCAGAAGCT GGAGGCCAGGGTACGTGAACTTGAAGGAGAAGTTGAAAGTGAACAGAAGCGCAATGTTGA AACCGTCAAGGGTCTACGCAAACACGAGAGAAGAGTAAAGGAACTCACTTACCAAACTGA GGAAGACCGCAAGAACATTCTCAGGCTCCAGGATCTGGTGGATAAACTGCAAGCAAAGGT GAAATCTTACAAGAGACAAGCTGAGGAAGCGGAGGAACAATCCAACGTCAACCTCTCCAA GTTCCGCAAGCTCCAGCACGAGCTGGAGGAGGCCGAGGAACGGGCTGACATTGCTGAGTC CCAGGTCAACAAGTTGCGGGTCAAGAGTCGGGAGGTTCACACAAAAATCATAAGTGAAGA GTAATTCATCCAAATGCTCAAAAGTGACCAAAGAAATGCACACAATGTGAAAATCTTTGT CACTCTGTTTTGTACTTAATGATTTTTGCAGATAAAAAATTTACCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCGCCACGACTGCGACCTGCTGCGGGAACAGTATGAGGAGGAGCAGGAATCCAAGGC CGAGCTGCAGAGGGCGCTGTCCAAGGCCAACACAGAGGTTGCCCAGTGGAGGACCAAGTA CGAGACGGACGCCATCCAGCGCACCGAGGAGCTGGAGGAGGCCAAGAAGAAACTGGCCCA GAGGCTGCAGGCAGCTGAGGAACACGTGGAAGCTGTGAACGCCAAGTGTGCTTCCCTCGA GAAGACGAAGCAGCGGCTCCAGAATGAGGTCGAGGACCTCATGCTCGATGTGGAGAGGAC CAATGCTGCCTGCGCGGCTCTCGACAAAAAGCAGAGGAACTTTGATAAGATCCTAGCAGA GTGGAAACAAAAGTACGAAGAAACTCATGCTGAACTTGAAGCCTCTCAGAAGGAGTCCCG CTCCCTTAGCACAGAGCTGTTCAAGGTGAAGAATGCTTATGAGGAGTCCTTAGACCAACT AGAAACCCTGAAGCGTGAAAATAAGAATTTGCAACAGGAGATTTCTGACCTCACGGAGCA GATTGCAGAAGGAGGGAAACGTATCCACGAACTGGAGAAAATAAAGAAACAAGTGGAACA AGAAAAGTCTGAGATTCAGGCTGCTTTAGAGGAAGCAGAGGCATCTCTTGAACATGAAGA AGGAAAGATTCTGCGCATCCAGCTGGAGTTGAACCAAGTCAAGTCGGAGGTGGACAGGAA AATCGCTGAGAAGGATGAGGAAATCGACCAGCTGAAGAGGAACCACGTCAGAGTCGTGGA GTCCATGCAGAGCATGCTGGATGCTGAGATCCGGAGCAGAAACGACGCCATCAGGCTCAA GAAGAAGATGGAGGGAGACCTCAATGAAATGGAAATCCAGCTGAACCACGCCAACCGCAT GGCTGCCGAGGCCCTGAGGAACTACAGGAACACCCAAGGCATCCTCAAGGACACCCAGAT CCACCTGGATGACGCTCTCAGGAGCCAAGAGGACCTGAAGGAGCAGCTGGCCATGGTGGA GCGCAGAGCCAACCTGCTGCAGGCTGAGATTGAGGAGCTGCGGGCCACGCTGGAGCAGAC AGAGAGGAGTAGGAAAGTCGCAGAACAGGAGCTCCTGGATGCCAGTGAGCGTGTCCAGCT CCTGCACACCCAGAATACCAGCCTGATCAACACCAAGAAGAAGCTGGAGACAGACATCTC CCAAATCCAGGGAGAGATGGAGGACATTATTCAGGAAGCTCGCAACGCAGAAGAAAAGGC CAAGAAGGCCATCACTGATGCGGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGACAC CAGCGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCA CCGTCTGGACGAGGCTGAGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCAGAAGCT GGAGGCCAGGGTACGTGAACTTGAAGGAGAAGTTGAAAGTGAACAGAAGCGCAATGTTGA AACCGTCAAGGGTCTACGCAAACACGAGAGAAGAGTAAAGGAACTCACTTACCAAACTGA GGAAGACCGCAAGAACATTCTCAGGCTCCAGGATCTGGTGGATAAACTGCAAGCAAAGGT GAAATCTTACAAGAGACAAGCTGAGGAAGCGGAGGAACAATCCAACGTCAACCTCTCCAA GTTCCGCAAGCTCCAGCACGAGCTGGAGGAGGCCGAGGAACGGGCTGACATTGCTGAGTC CCAGGTCAACAAGTTGCGGGTCAAGAGTCGGGAGGTTCACACAAAAATCATAAGTGAAGA GTAATTCATCCAAATGCTCAAAAGTGACCAAAGAAATGCACACAATGTGAAAATCTTTGT CACTCTGTTTTGTACTTAATGATTTTTGCAGATAAAAAATTTACCTGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 3-166, gnl|bosTau2|chr10 (13737123-13737286) | |
| 3-166, gnl|canFam2|chr8 (6640277-6640487) | |
| 3-166, gnl|danRer3|chr24 (32688782-32688986) | |
| 3-166, gnl|dasNov1|scaffold_2441 (66116-65916) | |
| 3-166, gnl|echTel1|scaffold_322757 (38349-38140) | |
| 3-166, gnl|fr1|chrUn (258625390-258625594) | |
| 3-166, gnl|galGal2|chr18 (340999-341200) | |
| 3-166, gnl|hg17|chr14 (22927899-22928108) | |
| 3-166, gnl|Hg17|chr14 (22928070-22927907) | |
| 3-166, gnl|loxAfr1|scaffold_6807 (20467-20676) | |
| 3-166, gnl|mm7|chr14 (49815911-49816124) | |
| 3-166, gnl|Mm7|chr14 (49816086-49815923) | |
| 3-166, gnl|monDom2|scaffold_12 (26313061-26312849) | |
| 3-166, gnl|oryCun1|scaffold_207117 (137553-137352) | |
| 3-166, gnl|panTro1|chr15 (21899624-21899833) | |
| 3-166, gnl|rheMac2|chr7 (86228244-86228453) | |
| 3-166, gnl|rn3|chr15 (33068031-33068244) | |
| 3-166, gnl|tetNig1|chrUn_random (96887336-96887134) | |
| 3-166, gnl|xenTro1|scaffold_53 (98446-98237) | |
| 348-513, gnl|bosTau2|chr10 (13738168-13738333) | |
| 348-513, gnl|Hg17|chr14 (22926974-22926809) | |
| 348-513, gnl|Mm7|chr14 (49815045-49814880) | |
| 639-954, gnl|bosTau2|chr10 (13721447-13721131) | |
| 639-954, gnl|Hg17|chr14 (22955363-22955047) | |
| 639-954, gnl|Mm7|chr14 (49840654-49840338) | |
| 1135-1278, gnl|bosTau2|chr19 (22704492-22704349) | |
| 1135-1278, gnl|canFam2|chr5 (37911424-37911572) | |
| 1135-1278, gnl|danRer3|chr5 (27639112-27638951) | |
| 1135-1278, gnl|dasNov1|scaffold_199 (93281-93429) | |
| 1135-1278, gnl|echTel1|scaffold_289995 (37173-37321) | |
| 1135-1278, gnl|fr1|chrUn (127063976-127063828) | |
| 1135-1278, gnl|galGal2|chr18 (568207-568339) | |
| 1135-1278, gnl|hg17|chr17 (10475649-10475797) | |
| 1135-1278, gnl|Hg17|chr17 (10475797-10475654) | |
| 1135-1278, gnl|loxAfr1|scaffold_7030 (15153-15301) | |
| 1135-1278, gnl|mm7|chr11 (67181573-67181426) | |
| 1135-1278, gnl|Mm7|chr11 (67181426-67181566) | |
| 1135-1278, gnl|monDom2|scaffold_18 (2857374-2857226) | |
| 1135-1278, gnl|oryCun1|scaffold_206763 (105196-105344) | |
| 1135-1278, gnl|panTro1|chr19_random (27943393-27943245) | |
| 1135-1278, gnl|rheMac2|chr16 (10383380-10383528) | |
| 1135-1278, gnl|rn3|chr10 (53812064-53811917) | |
| 1135-1278, gnl|tetNig1|chrUn_random (96352534-96352393) | |
| 1135-1278, gnl|xenTro1|scaffold_270 (82083-81935) | |
| 1280-1554, gnl|bosTau2|chr10 (13720368-13720094) | |
| 1280-1554, gnl|Hg17|chr14 (22954319-22954045) | |
| 1280-1554, gnl|Mm7|chr14 (49839549-49839275) | |
| 1651-1773, gnl|bosTau2|chr10 (13718990-13718868) | |
| 1651-1773, gnl|Hg17|chr14 (22952943-22952821) | |
| 1651-1773, gnl|Mm7|chr14 (49838098-49837976) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-166, gnl|bosTau2|chr10 (13737123-13737286) | |
| 3-166, gnl|canFam2|chr8 (6640277-6640487) | |
| 3-166, gnl|danRer3|chr24 (32688782-32688986) | |
| 3-166, gnl|dasNov1|scaffold_2441 (66116-65916) | |
| 3-166, gnl|echTel1|scaffold_322757 (38349-38140) | |
| 3-166, gnl|fr1|chrUn (258625390-258625594) | |
| 3-166, gnl|galGal2|chr18 (340999-341200) | |
| 3-166, gnl|hg17|chr14 (22927899-22928108) | |
| 3-166, gnl|Hg17|chr14 (22928070-22927907) | |
| 3-166, gnl|loxAfr1|scaffold_6807 (20467-20676) | |
| 3-166, gnl|mm7|chr14 (49815911-49816124) | |
| 3-166, gnl|Mm7|chr14 (49816086-49815923) | |
| 3-166, gnl|monDom2|scaffold_12 (26313061-26312849) | |
| 3-166, gnl|oryCun1|scaffold_207117 (137553-137352) | |
| 3-166, gnl|panTro1|chr15 (21899624-21899833) | |
| 3-166, gnl|rheMac2|chr7 (86228244-86228453) | |
| 3-166, gnl|rn3|chr15 (33068031-33068244) | |
| 3-166, gnl|tetNig1|chrUn_random (96887336-96887134) | |
| 3-166, gnl|xenTro1|scaffold_53 (98446-98237) | |
| 348-513, gnl|bosTau2|chr10 (13738168-13738333) | |
| 348-513, gnl|Hg17|chr14 (22926974-22926809) | |
| 348-513, gnl|Mm7|chr14 (49815045-49814880) | |
| 639-954, gnl|bosTau2|chr10 (13721447-13721131) | |
| 639-954, gnl|Hg17|chr14 (22955363-22955047) | |
| 639-954, gnl|Mm7|chr14 (49840654-49840338) | |
| 1135-1278, gnl|bosTau2|chr19 (22704492-22704349) | |
| 1135-1278, gnl|canFam2|chr5 (37911424-37911572) | |
| 1135-1278, gnl|danRer3|chr5 (27639112-27638951) | |
| 1135-1278, gnl|dasNov1|scaffold_199 (93281-93429) | |
| 1135-1278, gnl|echTel1|scaffold_289995 (37173-37321) | |
| 1135-1278, gnl|fr1|chrUn (127063976-127063828) | |
| 1135-1278, gnl|galGal2|chr18 (568207-568339) | |
| 1135-1278, gnl|hg17|chr17 (10475649-10475797) | |
| 1135-1278, gnl|Hg17|chr17 (10475797-10475654) | |
| 1135-1278, gnl|loxAfr1|scaffold_7030 (15153-15301) | |
| 1135-1278, gnl|mm7|chr11 (67181573-67181426) | |
| 1135-1278, gnl|Mm7|chr11 (67181426-67181566) | |
| 1135-1278, gnl|monDom2|scaffold_18 (2857374-2857226) | |
| 1135-1278, gnl|oryCun1|scaffold_206763 (105196-105344) | |
| 1135-1278, gnl|panTro1|chr19_random (27943393-27943245) | |
| 1135-1278, gnl|rheMac2|chr16 (10383380-10383528) | |
| 1135-1278, gnl|rn3|chr10 (53812064-53811917) | |
| 1135-1278, gnl|tetNig1|chrUn_random (96352534-96352393) | |
| 1135-1278, gnl|xenTro1|scaffold_270 (82083-81935) | |
| 1280-1554, gnl|bosTau2|chr10 (13720368-13720094) | |
| 1280-1554, gnl|Hg17|chr14 (22954319-22954045) | |
| 1280-1554, gnl|Mm7|chr14 (49839549-49839275) | |
| 1651-1773, gnl|bosTau2|chr10 (13718990-13718868) | |
| 1651-1773, gnl|Hg17|chr14 (22952943-22952821) | |
| 1651-1773, gnl|Mm7|chr14 (49838098-49837976) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nms (8.1266) | |
| ste (4.19145) | |
| ldo (3.7831) | |
| ctl (3.52059) | |
| ton (2.9835) | |
| tbr (2.77521) | |
| ssp (2.43935) | |
| nep (1.4714) | |
| bfe (1.34872) | |
| isp (0.902256) | |
| vin (0.665115) | |
| sme (0.305437) | |
| nca (0.273748) | |
| pty (0.142714) | |
| lyg (0.133103) | |
| jca (0.11396) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (8.1266) | |
| ste (4.19145) | |
| ldo (3.7831) | |
| ctl (3.52059) | |
| ton (2.9835) | |
| tbr (2.77521) | |
| ssp (2.43935) | |
| nep (1.4714) | |
| bfe (1.34872) | |
| isp (0.902256) | |
| vin (0.665115) | |
| sme (0.305437) | |
| nca (0.273748) | |
| pty (0.142714) | |
| lyg (0.133103) | |
| jca (0.11396) |