Non-Coding RNA Search

Ss1.1-Mus1-POSM0100004_E07.3

Sequence:


               
               TGATGCTTTAACTCTGATTTTACATTTTAAAGTTAAAATATGGGCATTATGTCAGCAAAC
TTAAGGGCATTATGTCAGCAAGCTAAAACATTTTTTTCCTGTGCTTTTAATGTGTCTCTT
TACATGATCTGAGAGCGGATTCAAGCTTTTAGAGAAGTAGCTGAGGGAAAAGGGAAACAT
CCTCTTGGGATGAAGCTTTTCCTTATGGCGATGGTTTAATTACAGACTCAGACATTAGAA
GGAAATTTCATTGGATTAATTGTATAGCTTTCGTAATTACATTTCAAGAAATTACCATTG
TAACTTGATAAGATATGGTTTATTTTATGTAAACATCATTGCAAAGCCAGGTGTAGAAGC
TCAGCTAGGTTTATTACTGTGCACGAGAGTAAGTACCTATCTCAAGTATCCTTTTTCCTT
TCCAATATAAAGTTTGCTGAATGTACAAGAAGAGTTTATCACTTAGGATATAGAATTTTT
TTAGGGGTTGGGGGGAGGGGCCCTGTCAGGAAATTACCTTTAAACACAGATTGTCTTGAT
TTGATCCGAAGCATAAAACTTGAAGCTATTCTTGAACATGGAAAAATAAAATGGCTATTG
TTTTAAAAAGAAATGATAGAAATATATTGTTGACATGATATGAATTACATTTATTTTCTA
CAAACTGTTATTGATGACATGGATAATATCTTCATGTTTCTGAAAAGTAATCTGTACATG
GGGGGAGGGGATAATAAATATTATTTCTAACCAGGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGCTTTAACTCTGATTTTACATTTTAAAGTTAAAATATGGGCATTATGTCAGCAAAC
TTAAGGGCATTATGTCAGCAAGCTAAAACATTTTTTTCCTGTGCTTTTAATGTGTCTCTT
TACATGATCTGAGAGCGGATTCAAGCTTTTAGAGAAGTAGCTGAGGGAAAAGGGAAACAT
CCTCTTGGGATGAAGCTTTTCCTTATGGCGATGGTTTAATTACAGACTCAGACATTAGAA
GGAAATTTCATTGGATTAATTGTATAGCTTTCGTAATTACATTTCAAGAAATTACCATTG
TAACTTGATAAGATATGGTTTATTTTATGTAAACATCATTGCAAAGCCAGGTGTAGAAGC
TCAGCTAGGTTTATTACTGTGCACGAGAGTAAGTACCTATCTCAAGTATCCTTTTTCCTT
TCCAATATAAAGTTTGCTGAATGTACAAGAAGAGTTTATCACTTAGGATATAGAATTTTT
TTAGGGGTTGGGGGGAGGGGCCCTGTCAGGAAATTACCTTTAAACACAGATTGTCTTGAT
TTGATCCGAAGCATAAAACTTGAAGCTATTCTTGAACATGGAAAAATAAAATGGCTATTG
TTTTAAAAAGAAATGATAGAAATATATTGTTGACATGATATGAATTACATTTATTTTCTA
CAAACTGTTATTGATGACATGGATAATATCTTCATGTTTCTGAAAAGTAATCTGTACATG
GGGGGAGGGGATAATAAATATTATTTCTAACCAGGAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               653-768, - strand, RNAz p=0.806551

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               653-768, - strand, RNAz p=0.806551

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               29-768, gnl|bosTau2|chr10 (1515747-1515026)
               

               
               29-768, gnl|Hg17|chr3 (23996388-23997112)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-768, gnl|bosTau2|chr10 (1515747-1515026)
               

               
               29-768, gnl|Hg17|chr3 (23996388-23997112)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               kid (0.129735)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               col (0.195008)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               kid (0.129735)

	29-768, gnl\|bosTau2\|chr10 (1515747-1515026)
	29-768, gnl\|Hg17\|chr3 (23996388-23997112)

	fce (0.271592)
	mgp (0.230681)
	col (0.195008)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	kid (0.129735)