Non-Coding RNA Search

Ss1.1-Mus1-POSM0100006_A07.3

Sequence:


               
               GGGCGCCTCCCTTCCACGGGCACCGGGACTTCGGCTTCAGCCCCGGCCTCCTGGAGGCAG
CCCATGTGGTGAGCGACGTGCACGAGGCTGTGCAGCTAGTCCTCCGTAAGGAGGGCTGGG
CTCTGTAGGGCGGCCCCGGGGGTGGGGGCCACTGGCTGCTGCCTCCCAGAGCTCCTGCTG
TCCCCAGGGGTGTTGACACTGCGGCTTGCAGGGACGCGCTGGCTCTCTTGCTCAGTGGGG
GCCACAGGCTTGTACCCTGGGTAGCCCTTTGGGTGGAAGCATCAGATTTTCTGGGCCCAT
TACTGTCTGCCTGTCCTGGCAGCCTGACCCCAGGTTTGTCATCATCCCTCAAGTGGTAAC
TTCTGCAGAAGGAGTGGCGGTGTGGCCTCTGCCCGGTGCCAGCATGGAGTGTAACTAACA
CCCCAACACTACTTTGTTTGGTATTTTATCTTGTCGCCCAGATATTTCAGACTTATTTTT
TTAAGATAATCATAATAAATATTCGTTTTGCTGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGCCTCCCTTCCACGGGCACCGGGACTTCGGCTTCAGCCCCGGCCTCCTGGAGGCAG
CCCATGTGGTGAGCGACGTGCACGAGGCTGTGCAGCTAGTCCTCCGTAAGGAGGGCTGGG
CTCTGTAGGGCGGCCCCGGGGGTGGGGGCCACTGGCTGCTGCCTCCCAGAGCTCCTGCTG
TCCCCAGGGGTGTTGACACTGCGGCTTGCAGGGACGCGCTGGCTCTCTTGCTCAGTGGGG
GCCACAGGCTTGTACCCTGGGTAGCCCTTTGGGTGGAAGCATCAGATTTTCTGGGCCCAT
TACTGTCTGCCTGTCCTGGCAGCCTGACCCCAGGTTTGTCATCATCCCTCAAGTGGTAAC
TTCTGCAGAAGGAGTGGCGGTGTGGCCTCTGCCCGGTGCCAGCATGGAGTGTAACTAACA
CCCCAACACTACTTTGTTTGGTATTTTATCTTGTCGCCCAGATATTTCAGACTTATTTTT
TTAAGATAATCATAATAAATATTCGTTTTGCTGTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-175, + strand, RNAz p=0.99998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-175, + strand, RNAz p=0.99998

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017829, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017829, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-175, gnl|bosTau2|chr5 (66228293-66228121)
               

               
               2-175, gnl|Hg17|chr22 (15993594-15993353)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-175, gnl|bosTau2|chr5 (66228293-66228121)
               

               
               2-175, gnl|Hg17|chr22 (15993594-15993353)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               nmm (0.132802)

	2-175, gnl\|bosTau2\|chr5 (66228293-66228121)
	2-175, gnl\|Hg17\|chr22 (15993594-15993353)