Non-Coding RNA Search

Ss1.1-Mus1-POSM0100006_B11.3

Sequence:


               
               GAGAGAGAGAGTACTTAATTCATAAAAAGTCCTGGAAACAGCTGTTCTAGGTTCTTGTCA
GTTTTTATTAAAAGTCTCGTGCACATGTGAAGTGCCCTCTCTGAATTTAAGGTTTGGTTA
ATACTGGTATATTTTTATAAGATTGAAATTGTGTCCCCGTCTTTAACTTAAAACATTTTC
ATCATCAGGGTCAATGTGCTAAAAACCGAATTGGAACATTTTTAGGCACAGATGGAAAAA
ATGTTATTGGCTCCTTGAAAATGGGTATGTGTGGTGAGGGGAATAGATCCACAAAAACGT
GTGTACTTACAAACCAAGCTGTAGAGATCAAGAAAAGAACTTAAGTGTGATCTCAAGATT
TCTAAATTGTCAAGATTTACATGGCATTGTGGTGGAACTAGGTAACACTTAGAGCTTTTG
GTATGTAATAACTATTTGCTATGGACTGATTAAATGTTTCAGAGGATTGTGTTCTTAAAT
TTTGGGGGCTTTTTGTTTTTTTAAACTGCCTCTCAGATTATATTTAGTAGTTTAAACTTC
TTTGCTTTATTATTTCATTAAAGCATAAAAAACTTCAGGTCTCTGATATATTTATTTTCA
CTTGTTCTACTAATTATTTACAGAACACCCTTTGTTAACTTTTATAAATGTGTAGTATAT
TAAATGTCTAAATTTTTGTTCCGTTGAAACTACATTAACTTCGATTTGCTTTACTGGGAT
TTTTTTTTTAAATACATCTTTTCCATGTCAGTGCATAGCACTTCACCAGTCATTTGTATT
CCCTTTCAATCCAATAAACAGAATGAATACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAGAGAGTACTTAATTCATAAAAAGTCCTGGAAACAGCTGTTCTAGGTTCTTGTCA
GTTTTTATTAAAAGTCTCGTGCACATGTGAAGTGCCCTCTCTGAATTTAAGGTTTGGTTA
ATACTGGTATATTTTTATAAGATTGAAATTGTGTCCCCGTCTTTAACTTAAAACATTTTC
ATCATCAGGGTCAATGTGCTAAAAACCGAATTGGAACATTTTTAGGCACAGATGGAAAAA
ATGTTATTGGCTCCTTGAAAATGGGTATGTGTGGTGAGGGGAATAGATCCACAAAAACGT
GTGTACTTACAAACCAAGCTGTAGAGATCAAGAAAAGAACTTAAGTGTGATCTCAAGATT
TCTAAATTGTCAAGATTTACATGGCATTGTGGTGGAACTAGGTAACACTTAGAGCTTTTG
GTATGTAATAACTATTTGCTATGGACTGATTAAATGTTTCAGAGGATTGTGTTCTTAAAT
TTTGGGGGCTTTTTGTTTTTTTAAACTGCCTCTCAGATTATATTTAGTAGTTTAAACTTC
TTTGCTTTATTATTTCATTAAAGCATAAAAAACTTCAGGTCTCTGATATATTTATTTTCA
CTTGTTCTACTAATTATTTACAGAACACCCTTTGTTAACTTTTATAAATGTGTAGTATAT
TAAATGTCTAAATTTTTGTTCCGTTGAAACTACATTAACTTCGATTTGCTTTACTGGGAT
TTTTTTTTTAAATACATCTTTTCCATGTCAGTGCATAGCACTTCACCAGTCATTTGTATT
CCCTTTCAATCCAATAAACAGAATGAATACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               27-814, gnl|bosTau2|chr16 (13843596-13844391)
               

               
               27-814, gnl|Hg17|chr1 (220880378-220879584)
               

               
               27-814, gnl|Mm7|chr1 (181153741-181152879)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-814, gnl|bosTau2|chr16 (13843596-13844391)
               

               
               27-814, gnl|Hg17|chr1 (220880378-220879584)
               

               
               27-814, gnl|Mm7|chr1 (181153741-181152879)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               mgp (0.461361)
               

               
               kid (0.259471)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               kid (0.259471)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	27-814, gnl\|bosTau2\|chr16 (13843596-13844391)
	27-814, gnl\|Hg17\|chr1 (220880378-220879584)
	27-814, gnl\|Mm7\|chr1 (181153741-181152879)

	mgp (0.461361)
	kid (0.259471)
	fbs (0.175346)
	eye (0.170503)
	fco (0.157208)
	tbr (0.154178)
	fat (0.147427)
	lin (0.145603)
	lnt (0.142308)
	ste (0.135208)
	thg (0.126791)
	ecc (0.115035)
	ldo (0.0970026)