Non-Coding RNA Search

Ss1.1-Mus1-POSM0100006_C08.3

Sequence:


               
               GCTGGGGACTCATGGGAAGAATCCCCTCAGCCTGCCCAAGACTGTTTTTTTTCCTGTACC
CTCTCCAGAGGGGTCAGGGGAAGGGGGTCCAGGTGGGTAGAGGGGGTTGCAATGGATAAC
CACTAAGGCCACACTGTTGCCAGGAGGAGTGGGGGGAGATGAGGTGGCCCCAGGGACCTG
GCACCTGGCTTTGGTTTTCCGTCTTCTTTCCTCAGGACGCCCCCTGAGGCTTGGGACCTG
CGCCTGGCTTTGAGGAGCATCTGTAGCTGGGTGCTCCAGCTGCTGGTGTGATCATGGGCT
TCCCTCCTCTCTCAGCAGGGCAGGTGCTCCTGCCCCAGAGACTGGGCAACTGGCTGTTTC
TATGACGTATTTATTTTTACTTGTGTTTCATGTCACTTTTTTAAAAAAGCAAACAGAACA
ATTGTAAGTCAGTATAACTGCCTATCAGTTTTCTTTATTTCTCTTTTTGTAAAATAAAAT
TTAAACTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGGACTCATGGGAAGAATCCCCTCAGCCTGCCCAAGACTGTTTTTTTTCCTGTACC
CTCTCCAGAGGGGTCAGGGGAAGGGGGTCCAGGTGGGTAGAGGGGGTTGCAATGGATAAC
CACTAAGGCCACACTGTTGCCAGGAGGAGTGGGGGGAGATGAGGTGGCCCCAGGGACCTG
GCACCTGGCTTTGGTTTTCCGTCTTCTTTCCTCAGGACGCCCCCTGAGGCTTGGGACCTG
CGCCTGGCTTTGAGGAGCATCTGTAGCTGGGTGCTCCAGCTGCTGGTGTGATCATGGGCT
TCCCTCCTCTCTCAGCAGGGCAGGTGCTCCTGCCCCAGAGACTGGGCAACTGGCTGTTTC
TATGACGTATTTATTTTTACTTGTGTTTCATGTCACTTTTTTAAAAAAGCAAACAGAACA
ATTGTAAGTCAGTATAACTGCCTATCAGTTTTCTTTATTTCTCTTTTTGTAAAATAAAAT
TTAAACTGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-420, + strand, RNAz p=0.999566

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-420, + strand, RNAz p=0.999566

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               3-125, + strand, RNAmicro p=0.999997

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               3-125, + strand, RNAmicro p=0.999997

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               108-44, DB813841 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB813841.1|), blast E-value=0.00000000000003, identity=100% 
               

               
               108-44, POSM0100006_C08 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190200.1|), blast E-value=0.00000000000003, identity=100% 
               

               
               109-420, BE04027A2H09 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN441884.1|), blast E-value=0, identity=96.19% 
               

               
               109-420, BovGen_10437 normal cattle brain Bos taurus cDNA clone 
(gb|CO882112.1|), blast E-value=0, identity=96.19% 
               

               
               109-420, UMC-bcl_0B01-035-d12 Day 14 CL +8h prostaglandin F2-alpha bcl Bos 
(gb|DN637513.1|), blast E-value=0, identity=94.92% 
               

               
               109-420, GL-Cf-12541 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN755745.1|), blast E-value=0, identity=94.92%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               108-44, DB813841 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB813841.1|), blast E-value=0.00000000000003, identity=100% 
               

               
               108-44, POSM0100006_C08 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190200.1|), blast E-value=0.00000000000003, identity=100% 
               

               
               109-420, BE04027A2H09 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN441884.1|), blast E-value=0, identity=96.19% 
               

               
               109-420, BovGen_10437 normal cattle brain Bos taurus cDNA clone 
(gb|CO882112.1|), blast E-value=0, identity=96.19% 
               

               
               109-420, UMC-bcl_0B01-035-d12 Day 14 CL +8h prostaglandin F2-alpha bcl Bos 
(gb|DN637513.1|), blast E-value=0, identity=94.92% 
               

               
               109-420, GL-Cf-12541 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN755745.1|), blast E-value=0, identity=94.92%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-493, gnl|bosTau2|chr22 (37592891-37593383)
               

               
               1-493, gnl|Hg17|chr3 (51677226-51677719)
               

               
               1-493, gnl|Mm7|chr9 (106418031-106417526)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-493, gnl|bosTau2|chr22 (37592891-37593383)
               

               
               1-493, gnl|Hg17|chr3 (51677226-51677719)
               

               
               1-493, gnl|Mm7|chr9 (106418031-106417526)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	108-44, DB813841 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB813841.1\|), blast E-value=0.00000000000003, identity=100%
	108-44, POSM0100006_C08 porcine skeletal muscle cDNA library (PoSM) Sus (gb\|BM190200.1\|), blast E-value=0.00000000000003, identity=100%
	109-420, BE04027A2H09 BE04 Normalized and Subtracted bovine embryonic and (gb\|CN441884.1\|), blast E-value=0, identity=96.19%
	109-420, BovGen_10437 normal cattle brain Bos taurus cDNA clone (gb\|CO882112.1\|), blast E-value=0, identity=96.19%
	109-420, UMC-bcl_0B01-035-d12 Day 14 CL +8h prostaglandin F2-alpha bcl Bos (gb\|DN637513.1\|), blast E-value=0, identity=94.92%
	109-420, GL-Cf-12541 GLGC-LIB0001-cf Canis familiaris Normalized Mixed (gb\|DN755745.1\|), blast E-value=0, identity=94.92%

	1-493, gnl\|bosTau2\|chr22 (37592891-37593383)
	1-493, gnl\|Hg17\|chr3 (51677226-51677719)
	1-493, gnl\|Mm7\|chr9 (106418031-106417526)

	ton (0.1755)
	nje (0.16592)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)