Non-Coding RNA Search

Ss1.1-Mus1-POSM0100006_H07.3

Sequence:


               
               GTGAAACCCAATCCCAGTGTCAACAAAGGGGACACCACCAACTCCAAATAGGCTTCTGTG
TACATGGTGTTTCCCCAGCTGGGCTGGGTCCTTAATGTTGCAAAGGTGCTAGAGGGTCCA
TGTTGAGGGTGGTGATGTAGTGAGGTCCTAATGCTGAAGCCCTTACCATTCCTGCTATGG
AATTAGGTTTATTTACTTTTTTCTGGGTAGAGGATGCTGAACCAAATCTCAGCATCCTCC
TGTAGGGCGGAGTTAGGGAATTTGGTGCTCAATTGCTCTCCCTCACTCTTCCCCAAACCA
AACAGTACCTAGTCCAGGATCCCTTGGGGGATGCTCAGGTTTGGCTGCAGAGCCTCCGCT
GACATGGGGAAGGATTGGCCTGGGGCTGAGGGAAACTGCCCTACATAAGGAGCAGCTCTA
AGTGTCTGGTGGTACTCCCATGCTGTGTGGGGGGAAGGTAGGGAAGCCACACTGCATCTG
GGTGCCTTGGTAGAACCAATCCTTCTGTCCTACCCCAGGAGGGCTGAGAGCTGGACTCTG
GACAGGAGAGCTTGTGCCTAGGCCTGCGTGCTGCTGCCGTCACCTAGGGGAGGATTGGGC
CTTCAAGTGGAGGGTGTCTCCCTGTCTGTCCCAGGGTTGAGGCAGGATGGTCATGATGAG
AACCGCCAGGTTTGAGGTGGCCATGGGTGGAGGGAAGAAAGGGGAGGACGCGGGTGTGGG
TGCGTGCGTGCATGTGCTTGTGTGTATGTGGGAGAAGGGTCTACCCTTGACCTTATTTAA
ATAAAATAGTTTATGTAACAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAACCCAATCCCAGTGTCAACAAAGGGGACACCACCAACTCCAAATAGGCTTCTGTG
TACATGGTGTTTCCCCAGCTGGGCTGGGTCCTTAATGTTGCAAAGGTGCTAGAGGGTCCA
TGTTGAGGGTGGTGATGTAGTGAGGTCCTAATGCTGAAGCCCTTACCATTCCTGCTATGG
AATTAGGTTTATTTACTTTTTTCTGGGTAGAGGATGCTGAACCAAATCTCAGCATCCTCC
TGTAGGGCGGAGTTAGGGAATTTGGTGCTCAATTGCTCTCCCTCACTCTTCCCCAAACCA
AACAGTACCTAGTCCAGGATCCCTTGGGGGATGCTCAGGTTTGGCTGCAGAGCCTCCGCT
GACATGGGGAAGGATTGGCCTGGGGCTGAGGGAAACTGCCCTACATAAGGAGCAGCTCTA
AGTGTCTGGTGGTACTCCCATGCTGTGTGGGGGGAAGGTAGGGAAGCCACACTGCATCTG
GGTGCCTTGGTAGAACCAATCCTTCTGTCCTACCCCAGGAGGGCTGAGAGCTGGACTCTG
GACAGGAGAGCTTGTGCCTAGGCCTGCGTGCTGCTGCCGTCACCTAGGGGAGGATTGGGC
CTTCAAGTGGAGGGTGTCTCCCTGTCTGTCCCAGGGTTGAGGCAGGATGGTCATGATGAG
AACCGCCAGGTTTGAGGTGGCCATGGGTGGAGGGAAGAAAGGGGAGGACGCGGGTGTGGG
TGCGTGCGTGCATGTGCTTGTGTGTATGTGGGAGAAGGGTCTACCCTTGACCTTATTTAA
ATAAAATAGTTTATGTAACAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               150-493, + strand, RNAz p=0.999114

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-493, + strand, RNAz p=0.999114

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               427-519, + strand, RNAmicro p=0.952525

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               427-519, + strand, RNAmicro p=0.952525

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_030645, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_030645, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-800, gnl|bosTau2|chr7 (26759793-26760597)
               

               
               1-800, gnl|Hg17|chr1 (245315172-245314401)
               

               
               1-800, gnl|Mm7|chr11 (58428533-58429269)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-800, gnl|bosTau2|chr7 (26759793-26760597)
               

               
               1-800, gnl|Hg17|chr1 (245315172-245314401)
               

               
               1-800, gnl|Mm7|chr11 (58428533-58429269)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ste (0.270416)
               

               
               ece (0.229305)
               

               
               ton (0.1755)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.270416)
               

               
               ece (0.229305)
               

               
               ton (0.1755)
               

               
               jej (0.0989218)

	1-800, gnl\|bosTau2\|chr7 (26759793-26760597)
	1-800, gnl\|Hg17\|chr1 (245315172-245314401)
	1-800, gnl\|Mm7\|chr11 (58428533-58429269)