Ss1.1-Mus1-POSM0100007_A01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTGGCCCTGCGGAAGCTGGGCCCTGAGGGAGAGCTTCTCATCCGCTTTTTTAACTCTT TCAACGATGCCACCATGGTGCTGGTCTCCTGGATCATGTGGTATGCCCCTGTGGGCATCA TGTTCCTGGTGGCCAGCAAGATTGTGGAGATGGAGGATGTGGGGATGCTCTTCGCCAGTC TGGGCAAGTACATCCTGTGCTGCCTGCTCGGCCACACCATCCATGGGCTCCTGGTGCTGC CTCTCATCTACTTCCTCTTCACTCGCAAAAACCCCTACCGCTTCCTGTGGGGCATCATGA CACCACTGGCCACTGCCTTTGGAACCTCATCCAGCTCCGCCACGCTGCCGCTGATGATGA AGTGCGTGGAGGAGAAGAACGGCGTGGCCAAGCACATCAGCCGCTTCATTCTGCCCATTG GTGCCACTGTCAACATGGACGGGGCCGCGCTCTTCCAGTGCGTGGCCGCGGTGTTCATTG CACAGCTCAACCAGCGGTCCTTGGACTTTGTGAACATTATCACTATCCTGGTCACCGCCA CGGCATCCAGTGTGGGCGCAGCGGGCATTCCCGCTGGAGGCGTCCTCACTCTGGCCATCA TCCTCGAGGCAGTCAACCTACCAGTTCACGACATCTCCTTGATCTTGGCTGTGGACTGGC TAGTGGACCGGTCCTGCACCGTCCTCAATGTGGAAGGCGATGCCTTCGGGGCTGGACTCC TCCAAAGTTACGTGGATCGCACGGAGGCCCCCAGCTCCGAGCCGGAGCTGATCCAGGTGA AGAACGAGACGCCCCTGGCCTTGCCGCCGGCTGCCGCCGAGGAGGGGAACCCTCTCCTGA GACCCTCTCCGGGAGCTGCCGGGGACGCGGACCCCTGTGAGAAGGAATCAGTCATGTAAA TCCAAGTGCGGGGCTCCCCTGCCCTGATGGGGGCGCTTTGGACCTGGAATCATGAATGAA CTGACAAACAGGGGCTCTTGGGGAGCCACTGCTCTCAGCAACCCTCCCTGACCTCGGGTC CCAGAGGCTTTGCAGCTGGGGCACAGGTGTTTGCTTGCATGTGTGGGCCTGTCTGTCTCC AAATCTCCCCCGTTCTTGACTCTTGTCCCCATCCAAGGCTAGGAAATGACAAGATGGAGC AGTAGCAGCCTCCACACCCCATCCTGGGAGCCTGCCCAGCTCAGGGCACAGGACACAGGT CACCAGCGCACTCTGCCCTCTGAGAGAAGGAGGTTCTGATGGGTTGCTGCCTCCTTTGCT GGTTATTTTGGTGGCGGCTCTAGCTCTGTGTGTACATGTGCGTGCGTGTGTGCCTGTGTG TGTGACTCTCCACAAACATCCCACCCTGTCCCCAGGCCCCTGTTCCCTCCACAGTAACAG AAACACTCCCGGGAACCCTGAGGGGAGACTGAGGGTAAATACCGATGTTATTCCAGAGTA CATTTTTTTAGCAATAAAACTGTCAAGTATATCTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTGGCCCTGCGGAAGCTGGGCCCTGAGGGAGAGCTTCTCATCCGCTTTTTTAACTCTT TCAACGATGCCACCATGGTGCTGGTCTCCTGGATCATGTGGTATGCCCCTGTGGGCATCA TGTTCCTGGTGGCCAGCAAGATTGTGGAGATGGAGGATGTGGGGATGCTCTTCGCCAGTC TGGGCAAGTACATCCTGTGCTGCCTGCTCGGCCACACCATCCATGGGCTCCTGGTGCTGC CTCTCATCTACTTCCTCTTCACTCGCAAAAACCCCTACCGCTTCCTGTGGGGCATCATGA CACCACTGGCCACTGCCTTTGGAACCTCATCCAGCTCCGCCACGCTGCCGCTGATGATGA AGTGCGTGGAGGAGAAGAACGGCGTGGCCAAGCACATCAGCCGCTTCATTCTGCCCATTG GTGCCACTGTCAACATGGACGGGGCCGCGCTCTTCCAGTGCGTGGCCGCGGTGTTCATTG CACAGCTCAACCAGCGGTCCTTGGACTTTGTGAACATTATCACTATCCTGGTCACCGCCA CGGCATCCAGTGTGGGCGCAGCGGGCATTCCCGCTGGAGGCGTCCTCACTCTGGCCATCA TCCTCGAGGCAGTCAACCTACCAGTTCACGACATCTCCTTGATCTTGGCTGTGGACTGGC TAGTGGACCGGTCCTGCACCGTCCTCAATGTGGAAGGCGATGCCTTCGGGGCTGGACTCC TCCAAAGTTACGTGGATCGCACGGAGGCCCCCAGCTCCGAGCCGGAGCTGATCCAGGTGA AGAACGAGACGCCCCTGGCCTTGCCGCCGGCTGCCGCCGAGGAGGGGAACCCTCTCCTGA GACCCTCTCCGGGAGCTGCCGGGGACGCGGACCCCTGTGAGAAGGAATCAGTCATGTAAA TCCAAGTGCGGGGCTCCCCTGCCCTGATGGGGGCGCTTTGGACCTGGAATCATGAATGAA CTGACAAACAGGGGCTCTTGGGGAGCCACTGCTCTCAGCAACCCTCCCTGACCTCGGGTC CCAGAGGCTTTGCAGCTGGGGCACAGGTGTTTGCTTGCATGTGTGGGCCTGTCTGTCTCC AAATCTCCCCCGTTCTTGACTCTTGTCCCCATCCAAGGCTAGGAAATGACAAGATGGAGC AGTAGCAGCCTCCACACCCCATCCTGGGAGCCTGCCCAGCTCAGGGCACAGGACACAGGT CACCAGCGCACTCTGCCCTCTGAGAGAAGGAGGTTCTGATGGGTTGCTGCCTCCTTTGCT GGTTATTTTGGTGGCGGCTCTAGCTCTGTGTGTACATGTGCGTGCGTGTGTGCCTGTGTG TGTGACTCTCCACAAACATCCCACCCTGTCCCCAGGCCCCTGTTCCCTCCACAGTAACAG AAACACTCCCGGGAACCCTGAGGGGAGACTGAGGGTAAATACCGATGTTATTCCAGAGTA CATTTTTTTAGCAATAAAACTGTCAAGTATATCTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 3-1447, - strand, RNAz p=0.940535 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-1447, - strand, RNAz p=0.940535 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 3-103, gnl|bosTau2|chr18 (49681600-49681700) | |
| 3-103, gnl|Hg17|chr19 (51977577-51977477) | |
| 3-103, gnl|Mm7|chr7 (14554011-14554111) | |
| 331-530, gnl|bosTau2|chr11 (41638406-41638605) | |
| 331-530, gnl|Hg17|chr2 (65156846-65157051) | |
| 331-530, gnl|Mm7|chr11 (20260104-20259900) | |
| 531-665, gnl|bosTau2|chr11 (41638900-41639034) | |
| 531-665, gnl|canFam2|chr10 (67653827-67653978) | |
| 531-665, gnl|danRer3|chr13 (28497701-28497555) | |
| 531-665, gnl|dasNov1|scaffold_28010 (42272-42423) | |
| 531-665, gnl|echTel1|scaffold_217469 (827-973) | |
| 531-665, gnl|fr1|chrUn (237358892-237359022) | |
| 531-665, gnl|galGal2|chr3 (7253969-7253826) | |
| 531-665, gnl|hg17|chr2 (65157324-65157475) | |
| 531-665, gnl|Hg17|chr2 (65157331-65157465) | |
| 531-665, gnl|loxAfr1|scaffold_19055 (12102-11951) | |
| 531-665, gnl|mm7|chr11 (20258617-20258466) | |
| 531-665, gnl|Mm7|chr11 (20258608-20258474) | |
| 531-665, gnl|monDom2|scaffold_1 (30615127-30615279) | |
| 531-665, gnl|oryCun1|scaffold_179500 (56783-56944) | |
| 531-665, gnl|panTro1|chr12 (67390225-67390376) | |
| 531-665, gnl|rheMac2|chr13 (65232797-65232948) | |
| 531-665, gnl|rn3|chr14 (101146334-101146183) | |
| 531-665, gnl|tetNig1|chr17 (8521187-8521042) | |
| 531-665, gnl|xenTro1|scaffold_321 (308565-308417) | |
| 849-987, gnl|bosTau2|chr18 (49687405-49687550) | |
| 849-987, gnl|Hg17|chr19 (51970660-51970513) | |
| 849-987, gnl|Mm7|chr7 (14561857-14562006) | |
| 1047-1465, gnl|bosTau2|chr18 (49687664-49688088) | |
| 1047-1465, gnl|Hg17|chr19 (51970432-51969995) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-103, gnl|bosTau2|chr18 (49681600-49681700) | |
| 3-103, gnl|Hg17|chr19 (51977577-51977477) | |
| 3-103, gnl|Mm7|chr7 (14554011-14554111) | |
| 331-530, gnl|bosTau2|chr11 (41638406-41638605) | |
| 331-530, gnl|Hg17|chr2 (65156846-65157051) | |
| 331-530, gnl|Mm7|chr11 (20260104-20259900) | |
| 531-665, gnl|bosTau2|chr11 (41638900-41639034) | |
| 531-665, gnl|canFam2|chr10 (67653827-67653978) | |
| 531-665, gnl|danRer3|chr13 (28497701-28497555) | |
| 531-665, gnl|dasNov1|scaffold_28010 (42272-42423) | |
| 531-665, gnl|echTel1|scaffold_217469 (827-973) | |
| 531-665, gnl|fr1|chrUn (237358892-237359022) | |
| 531-665, gnl|galGal2|chr3 (7253969-7253826) | |
| 531-665, gnl|hg17|chr2 (65157324-65157475) | |
| 531-665, gnl|Hg17|chr2 (65157331-65157465) | |
| 531-665, gnl|loxAfr1|scaffold_19055 (12102-11951) | |
| 531-665, gnl|mm7|chr11 (20258617-20258466) | |
| 531-665, gnl|Mm7|chr11 (20258608-20258474) | |
| 531-665, gnl|monDom2|scaffold_1 (30615127-30615279) | |
| 531-665, gnl|oryCun1|scaffold_179500 (56783-56944) | |
| 531-665, gnl|panTro1|chr12 (67390225-67390376) | |
| 531-665, gnl|rheMac2|chr13 (65232797-65232948) | |
| 531-665, gnl|rn3|chr14 (101146334-101146183) | |
| 531-665, gnl|tetNig1|chr17 (8521187-8521042) | |
| 531-665, gnl|xenTro1|scaffold_321 (308565-308417) | |
| 849-987, gnl|bosTau2|chr18 (49687405-49687550) | |
| 849-987, gnl|Hg17|chr19 (51970660-51970513) | |
| 849-987, gnl|Mm7|chr7 (14561857-14562006) | |
| 1047-1465, gnl|bosTau2|chr18 (49687664-49688088) | |
| 1047-1465, gnl|Hg17|chr19 (51970432-51969995) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cst (0.420109) | |
| cov (0.396458) | |
| csp (0.322373) | |
| cli (0.305623) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| ute (0.265569) | |
| nbm (0.198649) | |
| cmu (0.186393) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cly (0.120642) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.420109) | |
| cov (0.396458) | |
| csp (0.322373) | |
| cli (0.305623) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| ute (0.265569) | |
| nbm (0.198649) | |
| cmu (0.186393) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cly (0.120642) | |
| jca (0.11396) | |
| eje (0.0988338) |