Non-Coding RNA Search

Ss1.1-Mus1-POSM0100007_H10.3

Sequence:


               
               GTACTGAGTGTGGCCGCTGCTTCAGCGACCGTTCAGACCTCACTAAGCACTGGCGCACAC
ACACAGGCGAGAAGCCTTATCGTTGTGAGCTGTGTGGCAAGCGCTTCACATGCGTGTCCA
ACCTCAACGTCCACTTGCGCAATCACGCTGGCCACAAGCCCCACAAGTGCCCTGAATGTG
GCAAAGCCTTCAGTGTGAGCTCCAAGCTGGCCCTACACCGCAAGACACATCTGGGTGAGC
GGCCAGCAGAATGTGCAGAGTGTGGCAAATGCTTTAGCCACAGCCGCTCGCTGTCGCAGC
ACCAGCGGGCTCATACCCGTGCTCGTGCAGCAACTACTGCTGCCACTGCCACTCAGGACA
AGGCAAGCACTGCGCTCATCTTTGCTGAGCAAGCAAGACAGGAAAAGCTGGGATTTTCTG
TGCCTAAGTTTAAAGAGACTTGCTGAGAGATCTCCCTGGAGTGGGCTGGATAAGCACTTA
TGTAGTGCCACAGGGCTGGTGGGGGCAACTGGCAGGTGGAGGTCTGTGGAAAGACAGCAT
GGCCTGTTACCTTCCTACATCTCTGTTGATAGCCCCTTCACCTGGCCTCTTGCTGTGCCC
CTCATCTACTTGTTAGCTCTTTGCCTGTTCTCAATCCTTCCTTTTCCCTCTCTGGGGAAT
AGGTGCAGGGGAAACCTCCCAGACCTCTCAGTGAAAGAATGCCCAAGTATTGGTGTGTTG
CATCCCTGCTGCTGTGCTCATATGTTTCCTGTTTTCCCACCAGTGTTCTGTCTTCTCCCA
TCTCTTTTTTCAGCCTGAGTCTCCTCTACCTCTCCTTTCTGGGTACTTTCGGTATCCTTC
CTTTTCAGGTAATGATCACAGGCTTGGCCAGGGTCAAATTCCTGTGGTCTTCTTATCTCT
GTAGTCTTCTTGCCCTGTGGTCTTCTTGCCTCTTCCTTCTACTTGACTGTTAGTCTCTTT
GCAGCTTTCTCCCGTAGCTTCTGAGAGATGGGAAACTTGCAGAGAGATAGTGAGAGAGCT
CACATCACTGAAAGAGATCTCCATACCAGAAACAACCAAAGAAGTGTTTCACATCATGTA
AAGGTGGGCAGGAGCCCTCAGCATGGCACCTACCTGTCCTATGGGACAGATCTGCTGGTG
TACAGATCAAGGTGCCTCTCAGGACAATGTTCTCCAACCAGGTGGAGGACATTAGTCCTG
GGACCTGGGCAAGACTACATGGGTCCACAAAGCCAGGCACTGCCAACTAGAGTAAGAGAA
TGATATATACAAATCAAACTTGGAGCCATGGAGAAACTGAGCTCTACAGAGGCAACAGTG
CAGGGTGGAAAATTACCTGGAATTGTCAGTGATTTTTTTTGTTTGCAGGTGGTGAAATAA
AGAATTTGTTTGGTTCCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACTGAGTGTGGCCGCTGCTTCAGCGACCGTTCAGACCTCACTAAGCACTGGCGCACAC
ACACAGGCGAGAAGCCTTATCGTTGTGAGCTGTGTGGCAAGCGCTTCACATGCGTGTCCA
ACCTCAACGTCCACTTGCGCAATCACGCTGGCCACAAGCCCCACAAGTGCCCTGAATGTG
GCAAAGCCTTCAGTGTGAGCTCCAAGCTGGCCCTACACCGCAAGACACATCTGGGTGAGC
GGCCAGCAGAATGTGCAGAGTGTGGCAAATGCTTTAGCCACAGCCGCTCGCTGTCGCAGC
ACCAGCGGGCTCATACCCGTGCTCGTGCAGCAACTACTGCTGCCACTGCCACTCAGGACA
AGGCAAGCACTGCGCTCATCTTTGCTGAGCAAGCAAGACAGGAAAAGCTGGGATTTTCTG
TGCCTAAGTTTAAAGAGACTTGCTGAGAGATCTCCCTGGAGTGGGCTGGATAAGCACTTA
TGTAGTGCCACAGGGCTGGTGGGGGCAACTGGCAGGTGGAGGTCTGTGGAAAGACAGCAT
GGCCTGTTACCTTCCTACATCTCTGTTGATAGCCCCTTCACCTGGCCTCTTGCTGTGCCC
CTCATCTACTTGTTAGCTCTTTGCCTGTTCTCAATCCTTCCTTTTCCCTCTCTGGGGAAT
AGGTGCAGGGGAAACCTCCCAGACCTCTCAGTGAAAGAATGCCCAAGTATTGGTGTGTTG
CATCCCTGCTGCTGTGCTCATATGTTTCCTGTTTTCCCACCAGTGTTCTGTCTTCTCCCA
TCTCTTTTTTCAGCCTGAGTCTCCTCTACCTCTCCTTTCTGGGTACTTTCGGTATCCTTC
CTTTTCAGGTAATGATCACAGGCTTGGCCAGGGTCAAATTCCTGTGGTCTTCTTATCTCT
GTAGTCTTCTTGCCCTGTGGTCTTCTTGCCTCTTCCTTCTACTTGACTGTTAGTCTCTTT
GCAGCTTTCTCCCGTAGCTTCTGAGAGATGGGAAACTTGCAGAGAGATAGTGAGAGAGCT
CACATCACTGAAAGAGATCTCCATACCAGAAACAACCAAAGAAGTGTTTCACATCATGTA
AAGGTGGGCAGGAGCCCTCAGCATGGCACCTACCTGTCCTATGGGACAGATCTGCTGGTG
TACAGATCAAGGTGCCTCTCAGGACAATGTTCTCCAACCAGGTGGAGGACATTAGTCCTG
GGACCTGGGCAAGACTACATGGGTCCACAAAGCCAGGCACTGCCAACTAGAGTAAGAGAA
TGATATATACAAATCAAACTTGGAGCCATGGAGAAACTGAGCTCTACAGAGGCAACAGTG
CAGGGTGGAAAATTACCTGGAATTGTCAGTGATTTTTTTTGTTTGCAGGTGGTGAAATAA
AGAATTTGTTTGGTTCCAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q29294_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29294_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               953-1263, + strand, RNAz p=0.999898

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               953-1263, + strand, RNAz p=0.999898

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_024836, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_024836, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-316, gnl|bosTau2|chr10 (8996410-8996095)
               

               
               1-316, gnl|Hg17|chr19 (42818215-42817816)
               


               
               914-1396, gnl|bosTau2|chr7 (28847672-28848145)
               

               
               914-1396, gnl|Hg17|chr1 (245353051-245353463)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-316, gnl|bosTau2|chr10 (8996410-8996095)
               

               
               1-316, gnl|Hg17|chr19 (42818215-42817816)
               


               
               914-1396, gnl|bosTau2|chr7 (28847672-28848145)
               

               
               914-1396, gnl|Hg17|chr1 (245353051-245353463)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	1-316, gnl\|bosTau2\|chr10 (8996410-8996095)
	1-316, gnl\|Hg17\|chr19 (42818215-42817816)

	914-1396, gnl\|bosTau2\|chr7 (28847672-28848145)
	914-1396, gnl\|Hg17\|chr1 (245353051-245353463)

	nmm (0.265604)
	ece (0.229305)
	tes (0.207814)
	fcc (0.197785)
	fty (0.17584)
	rec (0.17307)
	pla (0.133672)
	ret (0.128733)
	tra (0.123092)
	pgl (0.118483)
	cty (0.10408)