Ss1.1-Mus1-POSM0100008_B12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCCTGGACCGGACAATTGCCGGCTGGTCCCCAACCCAGGCCAGGAGGACAGCAACAGC GACGGCGTGGGAGACATCTGCGAGACCGACTTTGACCAGGACCAGGTCATCGACCGTATC GACGTCTGCCCGGAGAATGCCGAGGTCACCCTGACCGACTTCAGGGCCTACCAGACTGTG GTCCTGGACCCTGAAGGGGACGCCCAGATCGATCCCAATTGGGTGGTCCTGAACCAGGGC ATGGAGATCGTGCAGACCATGAACAGCGATCCCGGCCTGGCCGTGGGCTACACGGCTTTT AATGGGGTTGACTTCGAAGGGACCTTCCACGTCAACACCCAAACGGACGATGACTATGCT GGCTTTATCTTCGGTTACCAAGACAGCTCCAGCTTCTACGTGGTCATGTGGAAGCAGACA GAGCAGACATACTGGCAGGCCACCCCATTCCGAGCCGTTGCAGAACCCGGCATCCAGCTC AAGGCGGTTAAGTCTAAGACAGGACCAGGGGAGCATCTCCGCAACTCCCTGTGGCACACG GGGGACACCAGCGACCAGGTCAGGCTGCTGTGGAAGGACTCCAGGAACGTGGGCTGGAAG GACAAGGTGTCCTATCGCTGGTTCCTGCAGCACCGGCCCCAGGTGGGCTACATCAGGGTG CGATTTTATGAGGGCTCCGAGTTGGTGGCTGACTCCGGGGTCACCATAGACACCACCATG CGTGGAGGCCGGCTTGGCGTGTTCTGCTTCTCCCAGGAAAACATCATCTGGTCCAACCTC AAGTATCGCTGCAATGACACCATCCCAGAGGACTTCCAAGAGTTTCAGACCCAGAATTTC GATCGCCTGGATAACTAAACCGAGGAAGCAATCCACAACTGCTTTTCCAAACACTAAAGC CATATATTTTTTAACTTCCTACAGTTTTCTTTTTATACACTGTGGCTTTCTTTTACCCAC CCCATATACCAAACTTTTTATATGAATGTGGCAATAAAGAAGAGATAATTTCTAAAAACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCCTGGACCGGACAATTGCCGGCTGGTCCCCAACCCAGGCCAGGAGGACAGCAACAGC GACGGCGTGGGAGACATCTGCGAGACCGACTTTGACCAGGACCAGGTCATCGACCGTATC GACGTCTGCCCGGAGAATGCCGAGGTCACCCTGACCGACTTCAGGGCCTACCAGACTGTG GTCCTGGACCCTGAAGGGGACGCCCAGATCGATCCCAATTGGGTGGTCCTGAACCAGGGC ATGGAGATCGTGCAGACCATGAACAGCGATCCCGGCCTGGCCGTGGGCTACACGGCTTTT AATGGGGTTGACTTCGAAGGGACCTTCCACGTCAACACCCAAACGGACGATGACTATGCT GGCTTTATCTTCGGTTACCAAGACAGCTCCAGCTTCTACGTGGTCATGTGGAAGCAGACA GAGCAGACATACTGGCAGGCCACCCCATTCCGAGCCGTTGCAGAACCCGGCATCCAGCTC AAGGCGGTTAAGTCTAAGACAGGACCAGGGGAGCATCTCCGCAACTCCCTGTGGCACACG GGGGACACCAGCGACCAGGTCAGGCTGCTGTGGAAGGACTCCAGGAACGTGGGCTGGAAG GACAAGGTGTCCTATCGCTGGTTCCTGCAGCACCGGCCCCAGGTGGGCTACATCAGGGTG CGATTTTATGAGGGCTCCGAGTTGGTGGCTGACTCCGGGGTCACCATAGACACCACCATG CGTGGAGGCCGGCTTGGCGTGTTCTGCTTCTCCCAGGAAAACATCATCTGGTCCAACCTC AAGTATCGCTGCAATGACACCATCCCAGAGGACTTCCAAGAGTTTCAGACCCAGAATTTC GATCGCCTGGATAACTAAACCGAGGAAGCAATCCACAACTGCTTTTCCAAACACTAAAGC CATATATTTTTTAACTTCCTACAGTTTTCTTTTTATACACTGTGGCTTTCTTTTACCCAC CCCATATACCAAACTTTTTATATGAATGTGGCAATAAAGAAGAGATAATTTCTAAAAACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 98-261, + strand, RNAz p=0.55899 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 98-261, + strand, RNAz p=0.55899 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 59-261, gnl|bosTau2|chr10 (5024837-5024635) | |
| 59-261, gnl|Hg17|chr5 (79409628-79409830) | |
| 59-261, gnl|Mm7|chr13 (89818980-89818779) | |
| 286-484, gnl|bosTau2|chr10 (5022942-5022744) | |
| 286-484, gnl|canFam2|chr3 (29831399-29831272) | |
| 286-484, gnl|danRer3|chr5 (57145749-57145622) | |
| 286-484, gnl|dasNov1|scaffold_73 (9973-9845) | |
| 286-484, gnl|echTel1|scaffold_317528 (100571-100698) | |
| 286-484, gnl|fr1|chrUn (92120212-92120085) | |
| 286-484, gnl|galGal2|chrZ (5247219-5247092) | |
| 286-484, gnl|hg17|chr5 (79410639-79410766) | |
| 286-484, gnl|Hg17|chr5 (79410640-79410838) | |
| 286-484, gnl|loxAfr1|scaffold_9198 (10617-10490) | |
| 286-484, gnl|mm7|chr13 (89817683-89817556) | |
| 286-484, gnl|Mm7|chr13 (89817680-89817482) | |
| 286-484, gnl|monDom2|scaffold_27 (35786932-35786805) | |
| 286-484, gnl|oryCun1|scaffold_186394 (7800-7927) | |
| 286-484, gnl|panTro1|chr4 (35776064-35775956) | |
| 286-484, gnl|rheMac2|chr6 (76282837-76282964) | |
| 286-484, gnl|rn3|chr2 (22934235-22934108) | |
| 286-484, gnl|tetNig1|chr4 (3927439-3927566) | |
| 286-484, gnl|xenTro1|scaffold_183 (1242494-1242367) | |
| 654-794, gnl|bosTau2|chr7 (2220288-2220148) | |
| 654-794, gnl|canFam2|chr20 (47316276-47316121) | |
| 654-794, gnl|danRer3|chrNA (81812923-81813074) | |
| 654-794, gnl|dasNov1|scaffold_73 (7433-7583) | |
| 654-794, gnl|echTel1|scaffold_237898 (4485-4636) | |
| 654-794, gnl|fr1|chrUn (88754970-88754815) | |
| 654-794, gnl|galGal2|chr28 (3167218-3167068) | |
| 654-794, gnl|hg17|chr19 (18754856-18755011) | |
| 654-794, gnl|Hg17|chr19 (18755006-18754866) | |
| 654-794, gnl|loxAfr1|scaffold_115122 (4223-4377) | |
| 654-794, gnl|mm7|chr8 (68837031-68836876) | |
| 654-794, gnl|Mm7|chr8 (68836881-68837019) | |
| 654-794, gnl|monDom2|scaffold_75 (1397465-1397619) | |
| 654-794, gnl|oryCun1|scaffold_107578 (9778-9939) | |
| 654-794, gnl|panTro1|chr20_random (5229177-5229332) | |
| 654-794, gnl|rheMac2|chr19 (18406365-18406520) | |
| 654-794, gnl|rn3|chr2 (181344855-181344701) | |
| 654-794, gnl|tetNig1|chr1 (14632498-14632649) | |
| 654-794, gnl|xenTro1|scaffold_1072 (248434-248585) | |
| 796-1020, gnl|bosTau2|chr10 (5018551-5018325) | |
| 796-1020, gnl|Hg17|chr5 (79414658-79414868) | |
| 796-1020, gnl|Mm7|chr13 (89814207-89813978) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 59-261, gnl|bosTau2|chr10 (5024837-5024635) | |
| 59-261, gnl|Hg17|chr5 (79409628-79409830) | |
| 59-261, gnl|Mm7|chr13 (89818980-89818779) | |
| 286-484, gnl|bosTau2|chr10 (5022942-5022744) | |
| 286-484, gnl|canFam2|chr3 (29831399-29831272) | |
| 286-484, gnl|danRer3|chr5 (57145749-57145622) | |
| 286-484, gnl|dasNov1|scaffold_73 (9973-9845) | |
| 286-484, gnl|echTel1|scaffold_317528 (100571-100698) | |
| 286-484, gnl|fr1|chrUn (92120212-92120085) | |
| 286-484, gnl|galGal2|chrZ (5247219-5247092) | |
| 286-484, gnl|hg17|chr5 (79410639-79410766) | |
| 286-484, gnl|Hg17|chr5 (79410640-79410838) | |
| 286-484, gnl|loxAfr1|scaffold_9198 (10617-10490) | |
| 286-484, gnl|mm7|chr13 (89817683-89817556) | |
| 286-484, gnl|Mm7|chr13 (89817680-89817482) | |
| 286-484, gnl|monDom2|scaffold_27 (35786932-35786805) | |
| 286-484, gnl|oryCun1|scaffold_186394 (7800-7927) | |
| 286-484, gnl|panTro1|chr4 (35776064-35775956) | |
| 286-484, gnl|rheMac2|chr6 (76282837-76282964) | |
| 286-484, gnl|rn3|chr2 (22934235-22934108) | |
| 286-484, gnl|tetNig1|chr4 (3927439-3927566) | |
| 286-484, gnl|xenTro1|scaffold_183 (1242494-1242367) | |
| 654-794, gnl|bosTau2|chr7 (2220288-2220148) | |
| 654-794, gnl|canFam2|chr20 (47316276-47316121) | |
| 654-794, gnl|danRer3|chrNA (81812923-81813074) | |
| 654-794, gnl|dasNov1|scaffold_73 (7433-7583) | |
| 654-794, gnl|echTel1|scaffold_237898 (4485-4636) | |
| 654-794, gnl|fr1|chrUn (88754970-88754815) | |
| 654-794, gnl|galGal2|chr28 (3167218-3167068) | |
| 654-794, gnl|hg17|chr19 (18754856-18755011) | |
| 654-794, gnl|Hg17|chr19 (18755006-18754866) | |
| 654-794, gnl|loxAfr1|scaffold_115122 (4223-4377) | |
| 654-794, gnl|mm7|chr8 (68837031-68836876) | |
| 654-794, gnl|Mm7|chr8 (68836881-68837019) | |
| 654-794, gnl|monDom2|scaffold_75 (1397465-1397619) | |
| 654-794, gnl|oryCun1|scaffold_107578 (9778-9939) | |
| 654-794, gnl|panTro1|chr20_random (5229177-5229332) | |
| 654-794, gnl|rheMac2|chr19 (18406365-18406520) | |
| 654-794, gnl|rn3|chr2 (181344855-181344701) | |
| 654-794, gnl|tetNig1|chr1 (14632498-14632649) | |
| 654-794, gnl|xenTro1|scaffold_1072 (248434-248585) | |
| 796-1020, gnl|bosTau2|chr10 (5018551-5018325) | |
| 796-1020, gnl|Hg17|chr5 (79414658-79414868) | |
| 796-1020, gnl|Mm7|chr13 (89814207-89813978) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| amn (0.835422) | |
| eru (0.480192) | |
| jca (0.45584) | |
| nms (0.427716) | |
| che (0.272628) | |
| ese (0.253004) | |
| sto (0.179824) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fat (0.147427) | |
| nca (0.136874) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| eru (0.480192) | |
| jca (0.45584) | |
| nms (0.427716) | |
| che (0.272628) | |
| ese (0.253004) | |
| sto (0.179824) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fat (0.147427) | |
| nca (0.136874) |