Non-Coding RNA Search

Ss1.1-Mus1-POSM0100009_G10F.5.5

Sequence:


               
               TAATTTGAACCACTCAGTCTCAACCACTGTACAGGTGTACAATGAGAAAAATTTAAACGC
GTAGTTATTTTTCCCACCAAGGTACAAAACACCCCTCTTCCTGCGGGGGGCCTGCAGGTG
TCTGATGTGACGGCTTTGCTCGCTTCCCGGCGGGGCCGCTCAGTACCCAATTCGCCATGG
AGCCCGGGGTCGAGAGCTACCTTTAAACACGTGTACAAACAGTTGTCCAAAGTAATGTTA
TTAAAATAGATTTATTATCCCTGAGCGTGGCCCATCTTGTTTTAATGATAATAAGCTCGT
GGCCACCTGGGAGTCATGCCACGTGCTGCCTCAGGAGGAGGCCTGAGATCACCAGCAGGG
CAAGCGAGCCTGGCATGCGCGGTACTTCCCAACACCCCGAAGGGCACTGCGGGGCTCGTC
CATGCGGGCCCCGGCACGACGGGCAAGACTGGCGCTGCCACGCCACTGCATGGGCCCGGC
CCGTCACCTACCACTGTGGTGAATCAGCACTTGATTTCCACCAAGGTACGAGGCTGCACA
GGGGTGGTGGCCCTAGGGACAGGCTCCGGGGGCCCTGGGCGGGATCATGCCACTTCTGGG
CACGGTGGGTACCTGGTACCTGGGCCAACAGGCAGGTGCCCAGCGCACTGCGGTGCTGTC
CTCAGGAGGCTGGTCTTGGAGGCCAGGTTACCACAGAGCCACGTCCGCAGCCTGGCGCTC
CCGGGCTGGGCCGCCGCAGGGGTGGGTGGCGCTCCCGTCCCACGCGATGCTTTAAATCCA
GACGCTTCCACGCTTCCTCCACCGGCAGCGGCTCCGCGTGCCTCTACTGGGCCCTGACCT
TCTTGCTCTGCGGGCTCGGGGGCCGCTCGGCGTGGGCCCGTTTCTGGGGGGGCTCCCCAT
CCCCGACCTCCGCGAGCAGGGCCGCCCGCACCTGCCGCAGTTCCCGCTTCTCCCTGCGCT
CCTCCATCTCCTCCAGGTCGCCCGCGAACAGGGCCTTCAGCGGCGCCATCAGCTTGGGCA
CGGTCGGGAGGTCTCCCAGGCTGACCTTCATGTGGTCAAAGGCGATGCCCACTTTCTCGT
TGAAGTCGGGGCTGAAGAGCGGGATCTTGGCGTAGCGCTGGCTGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATTTGAACCACTCAGTCTCAACCACTGTACAGGTGTACAATGAGAAAAATTTAAACGC
GTAGTTATTTTTCCCACCAAGGTACAAAACACCCCTCTTCCTGCGGGGGGCCTGCAGGTG
TCTGATGTGACGGCTTTGCTCGCTTCCCGGCGGGGCCGCTCAGTACCCAATTCGCCATGG
AGCCCGGGGTCGAGAGCTACCTTTAAACACGTGTACAAACAGTTGTCCAAAGTAATGTTA
TTAAAATAGATTTATTATCCCTGAGCGTGGCCCATCTTGTTTTAATGATAATAAGCTCGT
GGCCACCTGGGAGTCATGCCACGTGCTGCCTCAGGAGGAGGCCTGAGATCACCAGCAGGG
CAAGCGAGCCTGGCATGCGCGGTACTTCCCAACACCCCGAAGGGCACTGCGGGGCTCGTC
CATGCGGGCCCCGGCACGACGGGCAAGACTGGCGCTGCCACGCCACTGCATGGGCCCGGC
CCGTCACCTACCACTGTGGTGAATCAGCACTTGATTTCCACCAAGGTACGAGGCTGCACA
GGGGTGGTGGCCCTAGGGACAGGCTCCGGGGGCCCTGGGCGGGATCATGCCACTTCTGGG
CACGGTGGGTACCTGGTACCTGGGCCAACAGGCAGGTGCCCAGCGCACTGCGGTGCTGTC
CTCAGGAGGCTGGTCTTGGAGGCCAGGTTACCACAGAGCCACGTCCGCAGCCTGGCGCTC
CCGGGCTGGGCCGCCGCAGGGGTGGGTGGCGCTCCCGTCCCACGCGATGCTTTAAATCCA
GACGCTTCCACGCTTCCTCCACCGGCAGCGGCTCCGCGTGCCTCTACTGGGCCCTGACCT
TCTTGCTCTGCGGGCTCGGGGGCCGCTCGGCGTGGGCCCGTTTCTGGGGGGGCTCCCCAT
CCCCGACCTCCGCGAGCAGGGCCGCCCGCACCTGCCGCAGTTCCCGCTTCTCCCTGCGCT
CCTCCATCTCCTCCAGGTCGCCCGCGAACAGGGCCTTCAGCGGCGCCATCAGCTTGGGCA
CGGTCGGGAGGTCTCCCAGGCTGACCTTCATGTGGTCAAAGGCGATGCCCACTTTCTCGT
TGAAGTCGGGGCTGAAGAGCGGGATCTTGGCGTAGCGCTGGCTGAAGT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-321, gnl|bosTau2|chr19 (25075808-25076130)
               

               
               1-321, gnl|Hg17|chr17 (12835406-12835740)
               

               
               1-321, gnl|Mm7|chr11 (65083867-65083511)
               


               
               823-1047, gnl|bosTau2|chr19 (25076735-25076956)
               

               
               823-1047, gnl|Hg17|chr17 (12836857-12837089)
               

               
               823-1047, gnl|Mm7|chr11 (65082795-65082559)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-321, gnl|bosTau2|chr19 (25075808-25076130)
               

               
               1-321, gnl|Hg17|chr17 (12835406-12835740)
               

               
               1-321, gnl|Mm7|chr11 (65083867-65083511)
               


               
               823-1047, gnl|bosTau2|chr19 (25076735-25076956)
               

               
               823-1047, gnl|Hg17|chr17 (12836857-12837089)
               

               
               823-1047, gnl|Mm7|chr11 (65082795-65082559)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

	1-321, gnl\|bosTau2\|chr19 (25075808-25076130)
	1-321, gnl\|Hg17\|chr17 (12835406-12835740)
	1-321, gnl\|Mm7\|chr11 (65083867-65083511)

	823-1047, gnl\|bosTau2\|chr19 (25076735-25076956)
	823-1047, gnl\|Hg17\|chr17 (12836857-12837089)
	823-1047, gnl\|Mm7\|chr11 (65082795-65082559)

	fbs (0.175346)
	mcp (0.170648)
	csp (0.161186)
	hyp (0.142837)
	pgl (0.118483)