Non-Coding RNA Search

Ss1.1-Mus1-POSM0100010_B11F.5.5

Sequence:


               
               CAGACAGACCCATCAACACCACAGCAGGAGTCTTCGAAACCATTGGGAGGAATTCAGCCT
TCTTCTCAGAATGTCCAGCCCAAAGTGGAGGCTGATGCTGCCCAGGCGGCTGTGCAGAGC
GCATTTGCGGTTCTGTTGACTCAGTTGATAAAGGCTCAGCAGTCAAAGCAGAAAGATGTG
CTTCTAGAGGAGGGGGAAAACGGATCGGGACACGAAGCGGCATCACACCTCCGGCCCCCT
CCAGAGCCTAGCACTCCGGTGTCGGGGCAAGATGACCTCATGCCGCACCAAGACCGGAGG
ATCCTGGAGCCCGCCCCCGAGCCAGACCGGCCCCGCATTCTGCCCCCTGATCAGCGCCCG
CCGGAGCCCCCGGAACCCCCCCCGGCCACCGAAGAGGATCTGGATTATCGGACAGAAAAC
CAGCACGTACCCACCACTAGTTCTTCGTTGACTGACCCGCATGCTGGCGTGAAAGCAGCT
CTGTTGCAGCTCCTCGCTCAGCACCAGCCCCAGGAGGACCCCAAAAGGGAGGGTGGCATT
GAGTACCAGGCGGGAGACACTTACGCGGCCCCTTCGGACTACAAGGACAGTTTCGGGGCG
TCGTCTTTCTCCTCTGCCTCTTACGCCGGCAGCAGCGACGGGCTGGGGGGCGGCTCCGGC
CCCCCCTTGGAACGGCGCAGCTTCCTGGGCAGCTCGGACGTGCAGCCCGTGGACACCTAC
GGTACCGCGTCATCTCACTCCGGCGGCCCGCCTCCGCCGCCCGCCTTTTCTGAGTCCTTC
CCCAGCTCGGTGGCTGGGTACGGAGACATGTACCTCAGTGCAGGCCCCATGCTCTTCAGC
GGAGACAAGGACCATCGATTCGAGTACAGCCACGGGCCCATCGCCGTCCTGGCCAACAGC
AGCGACCCTGGCGCGGGGCCCGAGAGCGCGCACCCTCTGCCCGCAAAGATGCACAACTAC
AGCTACGGGGGCAACTTACAGGAGAACCCGGGCGGCCCCGGGCTCCTGCACGGACAGACC
TGGACTTCCCCTGCGCAGGGACCTGGGTACGCACAGGGGTACCGGGGACACATCAGCACA
TCGGCTGGCAGAGGTCGAGGCAGAGGGTTACCATACTGAGCATCTGTTTTTCCTCAGGCA
CATCATTTTTATCTGGAAAGACTTTTCTAGCTGCAATTTCAGGCAGCAAATCCAAGAGAC
TTGAATAATATTAATTCAACAACAGCTTTATTTTTATGTGGAAAAGGGTCTTGCATACAA
TAGTTTAAAAAAAAAGACAAAAAAACCCCCACCTTTGCTTAAATTCATGCTGTTCTAAAA
ACTAGATCTATTGATTGTACATCTTCACAAGTTCTAGTTAACAATTTTATTTTGTATTCT
TGCAGTTTTAAGTGGATGCCGATCTTAGGGACATAAAAGTCTTATGGCCCCTCTCGCAGA
TCTTCTGAACTATGCACATTTGTGCTTTTTTTGTAAGTTTGGACCAACTTTTATGTAACA
AACAACCCCTACCCCCCTCCAGTTTTACAACAATCAGAAAGGGCACTGATTTATTTGGTA
TTTTTCTTTTTACGAAGCTACCTTTAGTCCAAGGTCACTGTCAGTCTTTGCACCTGCTTT
CAGTGTTATTGTGAAAGGTGTACTTTGTGCTCATTTCAGAAAATAAAACACAACCTTTCT
CTTGATGCAACAGTTTTATATAAAACAAATGGTCAACGTTATTTTTGTTTTATTTTGCAG
ATTATCAGAGCAAAATGCATTCAAACGAAATAGTGGGTTTTCTATGAAAAATATGGGCGG
GTTGGGGAGGGTAAGTAAGTGCCTTCTTAACAGGTAAAAAAAGCTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACAGACCCATCAACACCACAGCAGGAGTCTTCGAAACCATTGGGAGGAATTCAGCCT
TCTTCTCAGAATGTCCAGCCCAAAGTGGAGGCTGATGCTGCCCAGGCGGCTGTGCAGAGC
GCATTTGCGGTTCTGTTGACTCAGTTGATAAAGGCTCAGCAGTCAAAGCAGAAAGATGTG
CTTCTAGAGGAGGGGGAAAACGGATCGGGACACGAAGCGGCATCACACCTCCGGCCCCCT
CCAGAGCCTAGCACTCCGGTGTCGGGGCAAGATGACCTCATGCCGCACCAAGACCGGAGG
ATCCTGGAGCCCGCCCCCGAGCCAGACCGGCCCCGCATTCTGCCCCCTGATCAGCGCCCG
CCGGAGCCCCCGGAACCCCCCCCGGCCACCGAAGAGGATCTGGATTATCGGACAGAAAAC
CAGCACGTACCCACCACTAGTTCTTCGTTGACTGACCCGCATGCTGGCGTGAAAGCAGCT
CTGTTGCAGCTCCTCGCTCAGCACCAGCCCCAGGAGGACCCCAAAAGGGAGGGTGGCATT
GAGTACCAGGCGGGAGACACTTACGCGGCCCCTTCGGACTACAAGGACAGTTTCGGGGCG
TCGTCTTTCTCCTCTGCCTCTTACGCCGGCAGCAGCGACGGGCTGGGGGGCGGCTCCGGC
CCCCCCTTGGAACGGCGCAGCTTCCTGGGCAGCTCGGACGTGCAGCCCGTGGACACCTAC
GGTACCGCGTCATCTCACTCCGGCGGCCCGCCTCCGCCGCCCGCCTTTTCTGAGTCCTTC
CCCAGCTCGGTGGCTGGGTACGGAGACATGTACCTCAGTGCAGGCCCCATGCTCTTCAGC
GGAGACAAGGACCATCGATTCGAGTACAGCCACGGGCCCATCGCCGTCCTGGCCAACAGC
AGCGACCCTGGCGCGGGGCCCGAGAGCGCGCACCCTCTGCCCGCAAAGATGCACAACTAC
AGCTACGGGGGCAACTTACAGGAGAACCCGGGCGGCCCCGGGCTCCTGCACGGACAGACC
TGGACTTCCCCTGCGCAGGGACCTGGGTACGCACAGGGGTACCGGGGACACATCAGCACA
TCGGCTGGCAGAGGTCGAGGCAGAGGGTTACCATACTGAGCATCTGTTTTTCCTCAGGCA
CATCATTTTTATCTGGAAAGACTTTTCTAGCTGCAATTTCAGGCAGCAAATCCAAGAGAC
TTGAATAATATTAATTCAACAACAGCTTTATTTTTATGTGGAAAAGGGTCTTGCATACAA
TAGTTTAAAAAAAAAGACAAAAAAACCCCCACCTTTGCTTAAATTCATGCTGTTCTAAAA
ACTAGATCTATTGATTGTACATCTTCACAAGTTCTAGTTAACAATTTTATTTTGTATTCT
TGCAGTTTTAAGTGGATGCCGATCTTAGGGACATAAAAGTCTTATGGCCCCTCTCGCAGA
TCTTCTGAACTATGCACATTTGTGCTTTTTTTGTAAGTTTGGACCAACTTTTATGTAACA
AACAACCCCTACCCCCCTCCAGTTTTACAACAATCAGAAAGGGCACTGATTTATTTGGTA
TTTTTCTTTTTACGAAGCTACCTTTAGTCCAAGGTCACTGTCAGTCTTTGCACCTGCTTT
CAGTGTTATTGTGAAAGGTGTACTTTGTGCTCATTTCAGAAAATAAAACACAACCTTTCT
CTTGATGCAACAGTTTTATATAAAACAAATGGTCAACGTTATTTTTGTTTTATTTTGCAG
ATTATCAGAGCAAAATGCATTCAAACGAAATAGTGGGTTTTCTATGAAAAATATGGGCGG
GTTGGGGAGGGTAAGTAAGTGCCTTCTTAACAGGTAAAAAAAGCTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5870326|gb|AAD54514.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5870326|gb|AAD54514.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1378-1494, + strand, RNAz p=0.894354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1378-1494, + strand, RNAz p=0.894354

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_031267, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_031267, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               265-1837, gnl|bosTau2|chr4 (47654503-47652935)
               

               
               265-1837, gnl|Hg17|chr7 (39906968-39908526)
               

               
               265-1837, gnl|Mm7|chr13 (17080684-17079098)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               265-1837, gnl|bosTau2|chr4 (47654503-47652935)
               

               
               265-1837, gnl|Hg17|chr7 (39906968-39908526)
               

               
               265-1837, gnl|Mm7|chr13 (17080684-17079098)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               thg (0.633955)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.633955)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)

	265-1837, gnl\|bosTau2\|chr4 (47654503-47652935)
	265-1837, gnl\|Hg17\|chr7 (39906968-39908526)
	265-1837, gnl\|Mm7\|chr13 (17080684-17079098)

	thg (0.633955)
	mgp (0.230681)
	hea (0.204499)
	nep (0.183925)
	sin (0.174948)
	eye (0.170503)
	cut (0.169924)
	lnt (0.142308)
	cst (0.140036)
	pla (0.133672)