Non-Coding RNA Search

Ss1.1-Mus1-POSM0100011_B06F.5

Sequence:


               
               GCTGGGCTGGGCTCAGAAGGGCGTCTACAGAGAAGTGATGCTGGCCAATTACAGAAACAT
GGTCTCCTTGGGATTTCAGTTCCCCAAACCTGAGGTGATCTGTCAGCTGGAGCAGTGGGA
AGAGCCGTGGATCCTGGATCTACCAAGAGCTGGGACTGGGACGGCTTCCAGTAGTGCTTG
CCCAGGTTCCACAGCCAGATTCGAGGTGCAGGAGCCGACTGCAAAGCAGAACATTTCTGA
AGATTTCGAGTCGTGTACGATGTCGCTGGTAAAGCAGAAAACGGCCAGGAAACCTTCAGA
AAAGTTACGTGAATGTGACGAGTTTGTGGACGTGTACGGACTTGCACTCCCCACGCTCGC
TGATGAAGGCTGGCAGGCCTTCCTTCAAAACTTTAACCTCGTTCAAGACTGGGACGCTCC
GGCGAGGACAAAGCAGGGCAAATACGACGCGTGTGGAAAAGCCCCCAAGCCGAGATCAGT
GCTTCCGAGGCAGAAGCGAATTCTCACAAATGCAAAATCTTACGAATGCAGCGAATGCGG
AAAAGTCTTCCGGCGTCAGGCAAACTTTGTTCGACATCAAAGAATTCACAGTTCAGAGGA
CCCCTTTGAGTGCCACATATGTGGGCAAGCCTTCGGACAGAAGTCTGCTCTCACTGTCCA
CAAACAGTGTCACTCGCAGAAAAAGCCATATAAATGCCAGGACTGTGGAAAGGGTTTCCG
TCAGATGGCGTATCTGGTGGAACACAGGAGGATCCATACCAAAGAAAGGCCCTATAAATG
CAGCGAATGTGAAAAAACGTTCCGTCAGAATTCAACCCTTATTCGACACCAGTTAATCCA
CAGTGGAGAGAAACCCCATAAATGCCTCGAATGTGGGAAAGCCTTTGGCCGGCACTCAAC
CCTGATGAGCCATCAACAGACTCACAGCAAACAGAAGGCCCATACGTGCAGTGAGTGTGG
GGAATCCTTTGGTCGGAAGGTAGATCTCATTCAGCATCAAAGAATCCATACCGAGGAGGA
GTTCTTTGAGTGCAGAGACTGTGGGAAGACTTTTAGTTTTAAGGCAAATCTGCATCGACA
CGAGGTCATTCACACTGGAGAGAGACCCTACAGATGTGACAAATGCGGCAAGTCTTTTAT
TTGGCGCACAAGCTTTATCAAGCACCAGGGTACTCACAGAGAGCAGATGGCTACCTGATA
CCAACTGGAAAAGCTACCACTCTAAGACCAGAACGTGGCTCTTGCTGCCGGTACATATAA
CTGGGCTGTTTGGTGAAAATAAAGAGGAACTGAAATGGGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGCTGGGCTCAGAAGGGCGTCTACAGAGAAGTGATGCTGGCCAATTACAGAAACAT
GGTCTCCTTGGGATTTCAGTTCCCCAAACCTGAGGTGATCTGTCAGCTGGAGCAGTGGGA
AGAGCCGTGGATCCTGGATCTACCAAGAGCTGGGACTGGGACGGCTTCCAGTAGTGCTTG
CCCAGGTTCCACAGCCAGATTCGAGGTGCAGGAGCCGACTGCAAAGCAGAACATTTCTGA
AGATTTCGAGTCGTGTACGATGTCGCTGGTAAAGCAGAAAACGGCCAGGAAACCTTCAGA
AAAGTTACGTGAATGTGACGAGTTTGTGGACGTGTACGGACTTGCACTCCCCACGCTCGC
TGATGAAGGCTGGCAGGCCTTCCTTCAAAACTTTAACCTCGTTCAAGACTGGGACGCTCC
GGCGAGGACAAAGCAGGGCAAATACGACGCGTGTGGAAAAGCCCCCAAGCCGAGATCAGT
GCTTCCGAGGCAGAAGCGAATTCTCACAAATGCAAAATCTTACGAATGCAGCGAATGCGG
AAAAGTCTTCCGGCGTCAGGCAAACTTTGTTCGACATCAAAGAATTCACAGTTCAGAGGA
CCCCTTTGAGTGCCACATATGTGGGCAAGCCTTCGGACAGAAGTCTGCTCTCACTGTCCA
CAAACAGTGTCACTCGCAGAAAAAGCCATATAAATGCCAGGACTGTGGAAAGGGTTTCCG
TCAGATGGCGTATCTGGTGGAACACAGGAGGATCCATACCAAAGAAAGGCCCTATAAATG
CAGCGAATGTGAAAAAACGTTCCGTCAGAATTCAACCCTTATTCGACACCAGTTAATCCA
CAGTGGAGAGAAACCCCATAAATGCCTCGAATGTGGGAAAGCCTTTGGCCGGCACTCAAC
CCTGATGAGCCATCAACAGACTCACAGCAAACAGAAGGCCCATACGTGCAGTGAGTGTGG
GGAATCCTTTGGTCGGAAGGTAGATCTCATTCAGCATCAAAGAATCCATACCGAGGAGGA
GTTCTTTGAGTGCAGAGACTGTGGGAAGACTTTTAGTTTTAAGGCAAATCTGCATCGACA
CGAGGTCATTCACACTGGAGAGAGACCCTACAGATGTGACAAATGCGGCAAGTCTTTTAT
TTGGCGCACAAGCTTTATCAAGCACCAGGGTACTCACAGAGAGCAGATGGCTACCTGATA
CCAACTGGAAAAGCTACCACTCTAAGACCAGAACGTGGCTCTTGCTGCCGGTACATATAA
CTGGGCTGTTTGGTGAAAATAAAGAGGAACTGAAATGGGAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57087727|ref|XP_546975.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57087727|ref|XP_546975.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               937-1056, + strand, RNAz p=0.690205

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               937-1056, + strand, RNAz p=0.690205

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               178-1283, gnl|bosTau2|chr25 (34713532-34714637)
               

               
               178-1283, gnl|Hg17|chr7 (98728742-98729850)
               


               
               451-1232, gnl|bosTau2|chr18 (42791326-42792111)
               

               
               451-1232, gnl|Mm7|chr7 (26838402-26837617)
               


               
               452-1214, gnl|bosTau2|chr13 (39984091-39984857)
               

               
               452-1214, gnl|Hg17|chr8 (185529-186295)
               

               
               452-1214, gnl|Mm7|chr7 (11121158-11121924)
               


               
               515-1178, gnl|bosTau2|chr10 (8996843-8996180)
               

               
               515-1178, gnl|Hg17|chr19 (42818648-42817901)
               

               
               515-1178, gnl|Mm7|chr2 (127310274-127309672)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-1283, gnl|bosTau2|chr25 (34713532-34714637)
               

               
               178-1283, gnl|Hg17|chr7 (98728742-98729850)
               


               
               451-1232, gnl|bosTau2|chr18 (42791326-42792111)
               

               
               451-1232, gnl|Mm7|chr7 (26838402-26837617)
               


               
               452-1214, gnl|bosTau2|chr13 (39984091-39984857)
               

               
               452-1214, gnl|Hg17|chr8 (185529-186295)
               

               
               452-1214, gnl|Mm7|chr7 (11121158-11121924)
               


               
               515-1178, gnl|bosTau2|chr10 (8996843-8996180)
               

               
               515-1178, gnl|Hg17|chr19 (42818648-42817901)
               

               
               515-1178, gnl|Mm7|chr2 (127310274-127309672)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fli (0.202881)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)

	178-1283, gnl\|bosTau2\|chr25 (34713532-34714637)
	178-1283, gnl\|Hg17\|chr7 (98728742-98729850)

	451-1232, gnl\|bosTau2\|chr18 (42791326-42792111)
	451-1232, gnl\|Mm7\|chr7 (26838402-26837617)

	452-1214, gnl\|bosTau2\|chr13 (39984091-39984857)
	452-1214, gnl\|Hg17\|chr8 (185529-186295)
	452-1214, gnl\|Mm7\|chr7 (11121158-11121924)

	515-1178, gnl\|bosTau2\|chr10 (8996843-8996180)
	515-1178, gnl\|Hg17\|chr19 (42818648-42817901)
	515-1178, gnl\|Mm7\|chr2 (127310274-127309672)

	fli (0.202881)
	gul (0.177588)
	mcp (0.170648)
	fco (0.157208)
	lun (0.150489)
	lnt (0.142308)
	hlv (0.139256)