Non-Coding RNA Search

Ss1.1-Mus1-POSM0100012_D04F.5

Sequence:


               
               TGTGTCAGGGACTGCCTCTGAAAACTGATTTAGCCTGTCACCGCTTGTGCTTTGGTTGTT
GCTTTGAATCACTGTAGTGTCTGTCTTTAGGCCTAAGGATCCTTGTTCTCCCTGGTCCCA
GGACCCCCTGCAGCCCCCCTCTTCCCTCTTCTAGAATAGCAACAGAAGCACAGAATTCTC
CCCCATGGAAGGTCACTCCACCTCCTGATTCTGAGGCTACCCCAGGCTCTCCATAGGGAA
AAGGAGGCCTCTGACACTTTCTTGCAAGTCACAGCCCCTTCTGGGCCTCAGTTTCTCCTT
TATGGCCCCCTCCTGGTACCTGGGTAAACTTGGCTTGGAGGGTGGTGTCTGTGACCTCCG
TGAAATATCTTAGCAATTTGGGGCATTCTCTGGGGTTAAATAAACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTCAGGGACTGCCTCTGAAAACTGATTTAGCCTGTCACCGCTTGTGCTTTGGTTGTT
GCTTTGAATCACTGTAGTGTCTGTCTTTAGGCCTAAGGATCCTTGTTCTCCCTGGTCCCA
GGACCCCCTGCAGCCCCCCTCTTCCCTCTTCTAGAATAGCAACAGAAGCACAGAATTCTC
CCCCATGGAAGGTCACTCCACCTCCTGATTCTGAGGCTACCCCAGGCTCTCCATAGGGAA
AAGGAGGCCTCTGACACTTTCTTGCAAGTCACAGCCCCTTCTGGGCCTCAGTTTCTCCTT
TATGGCCCCCTCCTGGTACCTGGGTAAACTTGGCTTGGAGGGTGGTGTCTGTGACCTCCG
TGAAATATCTTAGCAATTTGGGGCATTCTCTGGGGTTAAATAAACTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               75-249, - strand, RNAz p=0.971497
               

               
               151-341, - strand, RNAz p=0.998313

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-249, - strand, RNAz p=0.971497
               

               
               151-341, - strand, RNAz p=0.998313

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-408, gnl|bosTau2|chr7 (4226040-4226454)
               

               
               1-408, gnl|canFam2|chr20 (47793859-47793463)
               

               
               1-408, gnl|hg17|chr19 (18180466-18180919)
               

               
               1-408, gnl|Hg17|chr19 (18180903-18180474)
               

               
               1-408, gnl|loxAfr1|scaffold_16166 (22417-22844)
               

               
               1-408, gnl|panTro1|chr20 (19174683-19175128)
               

               
               1-408, gnl|rheMac2|chr19 (17792865-17793316)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-408, gnl|bosTau2|chr7 (4226040-4226454)
               

               
               1-408, gnl|canFam2|chr20 (47793859-47793463)
               

               
               1-408, gnl|hg17|chr19 (18180466-18180919)
               

               
               1-408, gnl|Hg17|chr19 (18180903-18180474)
               

               
               1-408, gnl|loxAfr1|scaffold_16166 (22417-22844)
               

               
               1-408, gnl|panTro1|chr20 (19174683-19175128)
               

               
               1-408, gnl|rheMac2|chr19 (17792865-17793316)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cki (0.165235)
               

               
               cst (0.140036)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               cst (0.140036)

	75-249, - strand, RNAz p=0.971497
	151-341, - strand, RNAz p=0.998313

	1-408, gnl\|bosTau2\|chr7 (4226040-4226454)
	1-408, gnl\|canFam2\|chr20 (47793859-47793463)
	1-408, gnl\|hg17\|chr19 (18180466-18180919)
	1-408, gnl\|Hg17\|chr19 (18180903-18180474)
	1-408, gnl\|loxAfr1\|scaffold_16166 (22417-22844)
	1-408, gnl\|panTro1\|chr20 (19174683-19175128)
	1-408, gnl\|rheMac2\|chr19 (17792865-17793316)