Non-Coding RNA Search

Ss1.1-OvF1-UMC-pd12fol-008-e05.3

Sequence:


               
               TGAGCTTTGGGTTACTTGAATAACTTTATCCGTGATGTCAATCTGTAGTAATAATTGTTT
TCCACTTGTAGTAATAATTGTTTTCCACTTGGTTATAAATTTTTTTTCATTCTTAAATTT
TGTTGCGGTTATAAAATTTTGATTTTCAAAGTATTTCCTTGAATCTTACATTCAAGGAAG
TGTAAGCCTTTGAATGAGAAAAACAAAACTGTATTATCACTCTTGAATCAGTGTAGACTG
ATCAGTACTAGGTCTTTTACCGTTCTGGAAGTGAGTGTTTAGACACAGAAATCCTTTCCT
TTATCACAGAGGATATGGTTTGTGATACTCTTTGTTGTTTTCATTGTGAATGCCTTTATA
AAACAATCATGAATATTGGATATTTTAAAATATTGTAGAATATTTGTTGTATGTAATCTT
TATAAGCAACAGGTGTCTTGTAAAATTGGCAAAAAAACATAAGCTGAAGTTGAAGGTTTC
TTCAAAGAATAAGTTCAGCTTTGGGGACTGTTAGTAACTGAGACTGCCACAACTCTTAGG
CTTCTACTAAGAACACTGCTAAATAATACAGTAACAGTGGCATCGTTGAAAACAGCCTGT
TTAAAACCCCTAACATAAGGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCTTTGGGTTACTTGAATAACTTTATCCGTGATGTCAATCTGTAGTAATAATTGTTT
TCCACTTGTAGTAATAATTGTTTTCCACTTGGTTATAAATTTTTTTTCATTCTTAAATTT
TGTTGCGGTTATAAAATTTTGATTTTCAAAGTATTTCCTTGAATCTTACATTCAAGGAAG
TGTAAGCCTTTGAATGAGAAAAACAAAACTGTATTATCACTCTTGAATCAGTGTAGACTG
ATCAGTACTAGGTCTTTTACCGTTCTGGAAGTGAGTGTTTAGACACAGAAATCCTTTCCT
TTATCACAGAGGATATGGTTTGTGATACTCTTTGTTGTTTTCATTGTGAATGCCTTTATA
AAACAATCATGAATATTGGATATTTTAAAATATTGTAGAATATTTGTTGTATGTAATCTT
TATAAGCAACAGGTGTCTTGTAAAATTGGCAAAAAAACATAAGCTGAAGTTGAAGGTTTC
TTCAAAGAATAAGTTCAGCTTTGGGGACTGTTAGTAACTGAGACTGCCACAACTCTTAGG
CTTCTACTAAGAACACTGCTAAATAATACAGTAACAGTGGCATCGTTGAAAACAGCCTGT
TTAAAACCCCTAACATAAGGACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-322, - strand, RNAz p=0.515223

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-322, - strand, RNAz p=0.515223

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               127-618, gnl|bosTau2|chr27 (1527353-1527843)
               

               
               127-618, gnl|Hg17|chr5 (159762075-159761556)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-618, gnl|bosTau2|chr27 (1527353-1527843)
               

               
               127-618, gnl|Hg17|chr5 (159762075-159761556)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbl (0.344392)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               pty (0.142714)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               pty (0.142714)

	127-618, gnl\|bosTau2\|chr27 (1527353-1527843)
	127-618, gnl\|Hg17\|chr5 (159762075-159761556)