Non-Coding RNA Search

Ss1.1-OvF2-UMC-p2mm4-011-h02.3.5

Sequence:


               
               ACTGTGATGATCGATTGCAAGTGCAAAGACTAAGACAAAACTCCGGCACACAAAGGACAA
TGACAACCAGAGAGCTTCAACCAGATCCTGCCCTTTCCTTGAAAGGAACTGGATCCTAGG
AGGTGAAGGCATTTCCAATTTTTAGTCCTCTGCCTCCCTCTGCTGTTCCTCTTGAGAAGT
TTTCCCCGACAACAATGAGAAATCATGTACTAGCTGCATCCTTTTCTATGCTCTCCCTGC
TGGCACTAATGGGAGATACAGACAGCAAAACAGACAGCTCATTCATGATGGACTCGGATC
CTCGACGCTGCATGAGGCACCACTATGTCGATTCTATCAGTCACCCGTTGCTACAAGTGT
AGCTCAAAGATGGTACTCCTGGCCAGGTGTGAGGGGCACTGCAGCCAGGCGTCGCGCTCC
GAGCCCTTGGTCTCCTTCAGCACTGTCCTCAAGCAGCCCTTCCGCTCCTCCTGTCACTGC
TGCCGGCCCCAGACCTCCAAGCTGAAGGCACTGCGGCTGCGCTGTTCGGGGGGCATGCGC
CTCACGGCCACCTACCGGTACATCCTGTCCTGTCACTGTGAGGAGTGCAGCTCCTGAGGC
CGGCTGCCGAGTGGCTTCTGGATGGGACAGCCTCCCCCGCTCGCTGAGGCAGCTCACCCA
GCCAAGGGAAGGACTGGCAAGACAAGGGTTAAGGCAAAAAAAGATGGAGCAATCCCCCCA
CCCCGTCCCCCCGCCCCGGGGGGGATTCTGCATATTCTAGTAATAAAGACTCTACATGCT
TGTTGACAGAGATACTCTGGGAACTTGTTTGCCATTCCTATCTCCTTTCCCTGGTACAAT
TTCTTCTGGTTCCTTTTCAGATTCAGGCATTTTTCCCCACCCCCCCACCCCCACCCCTAC
CCTTGGCGCTGAATGCTGTTTGGGGTTCCAACAATTCCGCATTAGTGGGAAAAGTGGGCC
CCCATGCAAGAGTGGGTCAGGCTGTCACTGTTTGGTACAGATTAGGGACTCATTTGCTTT
GGAAAGCAGGAAAGCCCAATTCGTTCTGGGACATCATCCGGCTTTTTAATTTTTTTTTTT
TTTTTTAATCTGGTCGTGTCGTCTAAGGTTGCTGTTGCTGCTAAAAGTTACCAATTTCAA
ATTCCAGGCACCAAGCATGTGGAGATATTTAGCCAGGATGACTTACGGCCAGCTAACTGA
CATTAAAATAACTAACAAACAGATTCTCCTCTGCGATGCTGGAACTCCTGATAGCCATAA
TTATTATTCAGAAATGACTTTGGGGGAAGGCAAAGTGGCAGAAAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTGATGATCGATTGCAAGTGCAAAGACTAAGACAAAACTCCGGCACACAAAGGACAA
TGACAACCAGAGAGCTTCAACCAGATCCTGCCCTTTCCTTGAAAGGAACTGGATCCTAGG
AGGTGAAGGCATTTCCAATTTTTAGTCCTCTGCCTCCCTCTGCTGTTCCTCTTGAGAAGT
TTTCCCCGACAACAATGAGAAATCATGTACTAGCTGCATCCTTTTCTATGCTCTCCCTGC
TGGCACTAATGGGAGATACAGACAGCAAAACAGACAGCTCATTCATGATGGACTCGGATC
CTCGACGCTGCATGAGGCACCACTATGTCGATTCTATCAGTCACCCGTTGCTACAAGTGT
AGCTCAAAGATGGTACTCCTGGCCAGGTGTGAGGGGCACTGCAGCCAGGCGTCGCGCTCC
GAGCCCTTGGTCTCCTTCAGCACTGTCCTCAAGCAGCCCTTCCGCTCCTCCTGTCACTGC
TGCCGGCCCCAGACCTCCAAGCTGAAGGCACTGCGGCTGCGCTGTTCGGGGGGCATGCGC
CTCACGGCCACCTACCGGTACATCCTGTCCTGTCACTGTGAGGAGTGCAGCTCCTGAGGC
CGGCTGCCGAGTGGCTTCTGGATGGGACAGCCTCCCCCGCTCGCTGAGGCAGCTCACCCA
GCCAAGGGAAGGACTGGCAAGACAAGGGTTAAGGCAAAAAAAGATGGAGCAATCCCCCCA
CCCCGTCCCCCCGCCCCGGGGGGGATTCTGCATATTCTAGTAATAAAGACTCTACATGCT
TGTTGACAGAGATACTCTGGGAACTTGTTTGCCATTCCTATCTCCTTTCCCTGGTACAAT
TTCTTCTGGTTCCTTTTCAGATTCAGGCATTTTTCCCCACCCCCCCACCCCCACCCCTAC
CCTTGGCGCTGAATGCTGTTTGGGGTTCCAACAATTCCGCATTAGTGGGAAAAGTGGGCC
CCCATGCAAGAGTGGGTCAGGCTGTCACTGTTTGGTACAGATTAGGGACTCATTTGCTTT
GGAAAGCAGGAAAGCCCAATTCGTTCTGGGACATCATCCGGCTTTTTAATTTTTTTTTTT
TTTTTTAATCTGGTCGTGTCGTCTAAGGTTGCTGTTGCTGCTAAAAGTTACCAATTTCAA
ATTCCAGGCACCAAGCATGTGGAGATATTTAGCCAGGATGACTTACGGCCAGCTAACTGA
CATTAAAATAACTAACAAACAGATTCTCCTCTGCGATGCTGGAACTCCTGATAGCCATAA
TTATTATTCAGAAATGACTTTGGGGGAAGGCAAAGTGGCAGAAAGAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61831718|ref|XP_588963.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61831718|ref|XP_588963.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               41-160, - strand, RNAz p=0.884375
               

               
               742-877, - strand, RNAz p=0.717088

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.884375
               

               
               742-877, - strand, RNAz p=0.717088

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               1-369, gnl|bosTau2|chrX (31315110-31314743)
               

               
               1-369, gnl|Hg17|chrX (43574339-43573972)
               

               
               1-369, gnl|Mm7|chrX (15327918-15327558)
               


               
               742-877, gnl|bosTau2|chrX (31304632-31304497)
               

               
               742-877, gnl|Hg17|chrX (43565185-43565046)
               

               
               742-877, gnl|Mm7|chrX (15319506-15319370)
               


               
               900-1308, gnl|bosTau2|chrX (31304498-31304102)
               

               
               900-1308, gnl|canFam2|chrX (37897549-37898274)
               

               
               900-1308, gnl|dasNov1|scaffold_70852 (2341-3155)
               

               
               900-1308, gnl|echTel1|scaffold_290666 (138575-139265)
               

               
               900-1308, gnl|hg17|chrX (43564329-43565057)
               

               
               900-1308, gnl|Hg17|chrX (43565047-43564644)
               

               
               900-1308, gnl|loxAfr1|scaffold_9738 (68972-69692)
               

               
               900-1308, gnl|mm7|chrX (15318725-15319381)
               

               
               900-1308, gnl|Mm7|chrX (15319371-15319005)
               

               
               900-1308, gnl|monDom2|scaffold_29 (19251301-19250536)
               

               
               900-1308, gnl|oryCun1|scaffold_206780 (74127-74850)
               

               
               900-1308, gnl|panTro1|chrX (45004345-45005074)
               

               
               900-1308, gnl|rheMac2|chrX (41696718-41697445)
               

               
               900-1308, gnl|rn3|chrX (17493898-17493218)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-369, gnl|bosTau2|chrX (31315110-31314743)
               

               
               1-369, gnl|Hg17|chrX (43574339-43573972)
               

               
               1-369, gnl|Mm7|chrX (15327918-15327558)
               


               
               742-877, gnl|bosTau2|chrX (31304632-31304497)
               

               
               742-877, gnl|Hg17|chrX (43565185-43565046)
               

               
               742-877, gnl|Mm7|chrX (15319506-15319370)
               


               
               900-1308, gnl|bosTau2|chrX (31304498-31304102)
               

               
               900-1308, gnl|canFam2|chrX (37897549-37898274)
               

               
               900-1308, gnl|dasNov1|scaffold_70852 (2341-3155)
               

               
               900-1308, gnl|echTel1|scaffold_290666 (138575-139265)
               

               
               900-1308, gnl|hg17|chrX (43564329-43565057)
               

               
               900-1308, gnl|Hg17|chrX (43565047-43564644)
               

               
               900-1308, gnl|loxAfr1|scaffold_9738 (68972-69692)
               

               
               900-1308, gnl|mm7|chrX (15318725-15319381)
               

               
               900-1308, gnl|Mm7|chrX (15319371-15319005)
               

               
               900-1308, gnl|monDom2|scaffold_29 (19251301-19250536)
               

               
               900-1308, gnl|oryCun1|scaffold_206780 (74127-74850)
               

               
               900-1308, gnl|panTro1|chrX (45004345-45005074)
               

               
               900-1308, gnl|rheMac2|chrX (41696718-41697445)
               

               
               900-1308, gnl|rn3|chrX (17493898-17493218)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               aor (0.195274)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               cov (0.132153)

	41-160, - strand, RNAz p=0.884375
	742-877, - strand, RNAz p=0.717088

	1-369, gnl\|bosTau2\|chrX (31315110-31314743)
	1-369, gnl\|Hg17\|chrX (43574339-43573972)
	1-369, gnl\|Mm7\|chrX (15327918-15327558)

	742-877, gnl\|bosTau2\|chrX (31304632-31304497)
	742-877, gnl\|Hg17\|chrX (43565185-43565046)
	742-877, gnl\|Mm7\|chrX (15319506-15319370)

	900-1308, gnl\|bosTau2\|chrX (31304498-31304102)
	900-1308, gnl\|canFam2\|chrX (37897549-37898274)
	900-1308, gnl\|dasNov1\|scaffold_70852 (2341-3155)
	900-1308, gnl\|echTel1\|scaffold_290666 (138575-139265)
	900-1308, gnl\|hg17\|chrX (43564329-43565057)
	900-1308, gnl\|Hg17\|chrX (43565047-43564644)
	900-1308, gnl\|loxAfr1\|scaffold_9738 (68972-69692)
	900-1308, gnl\|mm7\|chrX (15318725-15319381)
	900-1308, gnl\|Mm7\|chrX (15319371-15319005)
	900-1308, gnl\|monDom2\|scaffold_29 (19251301-19250536)
	900-1308, gnl\|oryCun1\|scaffold_206780 (74127-74850)
	900-1308, gnl\|panTro1\|chrX (45004345-45005074)
	900-1308, gnl\|rheMac2\|chrX (41696718-41697445)
	900-1308, gnl\|rn3\|chrX (17493898-17493218)