Non-Coding RNA Search

Ss1.1-OvF2-UMC-pd0fol-002-h07.3

Sequence:


               
               GGGAAATAGTTGCATCGATCTTGAATTAAATATTAATTCTCATATTTCATGTGAGGATTA
TTAGTGCAATCCCCTTTTTTGTTTGGCCTAAATCTGCTATAAGGGGAAGATTACAGTTTT
TTAAATGTCCTTGTTACTTAATTTGAAGATTCTTAACAGATCGCAGCAAAGTTCATTATA
AAACTGTTATGGTGTCTTCAAGGACATGATAAAATAATGCAGAGAGAATTGCTCCATTTG
TATTCTGTATTTGCATTAGTTGCCAAAGGAATGGGGTTAAAATTAAACTTGTTTCCATTC
TCCTTCATATGGATCTACATCCCCGTGTTTAACTGACACACTGGGGGTTCAGTTGTGTGC
TGTAATGTCTTATTAAAGAAGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAATAGTTGCATCGATCTTGAATTAAATATTAATTCTCATATTTCATGTGAGGATTA
TTAGTGCAATCCCCTTTTTTGTTTGGCCTAAATCTGCTATAAGGGGAAGATTACAGTTTT
TTAAATGTCCTTGTTACTTAATTTGAAGATTCTTAACAGATCGCAGCAAAGTTCATTATA
AAACTGTTATGGTGTCTTCAAGGACATGATAAAATAATGCAGAGAGAATTGCTCCATTTG
TATTCTGTATTTGCATTAGTTGCCAAAGGAATGGGGTTAAAATTAAACTTGTTTCCATTC
TCCTTCATATGGATCTACATCCCCGTGTTTAACTGACACACTGGGGGTTCAGTTGTGTGC
TGTAATGTCTTATTAAAGAAGATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               128-217, - strand, RNAz p=0.771991
               

               
               246-359, - strand, RNAz p=0.534338

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-217, - strand, RNAz p=0.771991
               

               
               246-359, - strand, RNAz p=0.534338

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_016096, -
               

               
               5' of NM_016096, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016096, -
               

               
               5' of NM_016096, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-383, gnl|bosTau2|chr14 (37757018-37756648)
               

               
               1-383, gnl|canFam2|chr13 (5985412-5985900)
               

               
               1-383, gnl|echTel1|scaffold_280211 (5248-4779)
               

               
               1-383, gnl|hg17|chr8 (102278444-102278911)
               

               
               1-383, gnl|Hg17|chr8 (102278831-102278467)
               

               
               1-383, gnl|loxAfr1|scaffold_8375 (95338-94854)
               

               
               1-383, gnl|mm7|chr15 (37109681-37110107)
               

               
               1-383, gnl|Mm7|chr15 (37110030-37109700)
               

               
               1-383, gnl|monDom2|scaffold_3 (62411399-62410923)
               

               
               1-383, gnl|oryCun1|scaffold_208164 (48102-47618)
               

               
               1-383, gnl|panTro1|chr7 (104636772-104637238)
               

               
               1-383, gnl|rheMac2|chr8 (103715630-103716097)
               

               
               1-383, gnl|rn3|chr7 (72530279-72530706)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-383, gnl|bosTau2|chr14 (37757018-37756648)
               

               
               1-383, gnl|canFam2|chr13 (5985412-5985900)
               

               
               1-383, gnl|echTel1|scaffold_280211 (5248-4779)
               

               
               1-383, gnl|hg17|chr8 (102278444-102278911)
               

               
               1-383, gnl|Hg17|chr8 (102278831-102278467)
               

               
               1-383, gnl|loxAfr1|scaffold_8375 (95338-94854)
               

               
               1-383, gnl|mm7|chr15 (37109681-37110107)
               

               
               1-383, gnl|Mm7|chr15 (37110030-37109700)
               

               
               1-383, gnl|monDom2|scaffold_3 (62411399-62410923)
               

               
               1-383, gnl|oryCun1|scaffold_208164 (48102-47618)
               

               
               1-383, gnl|panTro1|chr7 (104636772-104637238)
               

               
               1-383, gnl|rheMac2|chr8 (103715630-103716097)
               

               
               1-383, gnl|rn3|chr7 (72530279-72530706)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	128-217, - strand, RNAz p=0.771991
	246-359, - strand, RNAz p=0.534338

	1-383, gnl\|bosTau2\|chr14 (37757018-37756648)
	1-383, gnl\|canFam2\|chr13 (5985412-5985900)
	1-383, gnl\|echTel1\|scaffold_280211 (5248-4779)
	1-383, gnl\|hg17\|chr8 (102278444-102278911)
	1-383, gnl\|Hg17\|chr8 (102278831-102278467)
	1-383, gnl\|loxAfr1\|scaffold_8375 (95338-94854)
	1-383, gnl\|mm7\|chr15 (37109681-37110107)
	1-383, gnl\|Mm7\|chr15 (37110030-37109700)
	1-383, gnl\|monDom2\|scaffold_3 (62411399-62410923)
	1-383, gnl\|oryCun1\|scaffold_208164 (48102-47618)
	1-383, gnl\|panTro1\|chr7 (104636772-104637238)
	1-383, gnl\|rheMac2\|chr8 (103715630-103716097)
	1-383, gnl\|rn3\|chr7 (72530279-72530706)