Non-Coding RNA Search

Ss1.1-OvF2-UMC-pd0fol-003-h06.3

Sequence:


               
               GTTTGAAGAAACAGTAGCTGAAAATGTCCAAAATTAAGTGAAAAAGAAAATTTATTGACA
GAAAACTACATGTAGGCATTGTTTCCAAACATCTACAAGGCAAAGATTAGAAGAAAAATC
CTGAAAGCAACCAAAGAGATTTAAGGAATAGAATGCCTGTAGAAGAAAAATTAAGTAAAT
GTCAACTGATTCCTCATCATAAATGACAGATGCTAGAAACAATGTAATGCCATTTTTTAA
GTGGTTAAAAAGAAAACTCTCAACTCAAATTTATACTTAAAGTAATGATATCTTCTAATA
ATAAAAAATAAATAATTTTATATAAACAATATTTGTTGTTAGCATAATTCTTATAAGAGA
TGTGAAAGGAAGTTCTTTAGACTGAAATGACATCAGATGGAAACAGTTTTTAAAAAAGAA
TGAAAAATACTAAAAGTTATAAATATCTAAGTACATGTAAAGGAATATCTTTTTTATTCT
GTTAATTTTTAAAAATACTGTTTAATGCATAAAGTATAACTTTATCATGGATATATAATA
TTTATAAAATTTTAAATATATTAAAAATACTTCAGAGAACTGAGTGATGGTAAATAGAAT
TGCTGTAAGACTCACACACTTACATGAAGTGGTACAGTATTAACTCAAAGTAGACAGTGA
CAAATTAAGATTGTAATTCCTAGAACAACTGCTAAAAACAAATACAAAAATGTACAACTA
AAAAGCCAATAGTGGATTTAAATGGAGTAAAAAAATACCAATTTAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGAAGAAACAGTAGCTGAAAATGTCCAAAATTAAGTGAAAAAGAAAATTTATTGACA
GAAAACTACATGTAGGCATTGTTTCCAAACATCTACAAGGCAAAGATTAGAAGAAAAATC
CTGAAAGCAACCAAAGAGATTTAAGGAATAGAATGCCTGTAGAAGAAAAATTAAGTAAAT
GTCAACTGATTCCTCATCATAAATGACAGATGCTAGAAACAATGTAATGCCATTTTTTAA
GTGGTTAAAAAGAAAACTCTCAACTCAAATTTATACTTAAAGTAATGATATCTTCTAATA
ATAAAAAATAAATAATTTTATATAAACAATATTTGTTGTTAGCATAATTCTTATAAGAGA
TGTGAAAGGAAGTTCTTTAGACTGAAATGACATCAGATGGAAACAGTTTTTAAAAAAGAA
TGAAAAATACTAAAAGTTATAAATATCTAAGTACATGTAAAGGAATATCTTTTTTATTCT
GTTAATTTTTAAAAATACTGTTTAATGCATAAAGTATAACTTTATCATGGATATATAATA
TTTATAAAATTTTAAATATATTAAAAATACTTCAGAGAACTGAGTGATGGTAAATAGAAT
TGCTGTAAGACTCACACACTTACATGAAGTGGTACAGTATTAACTCAAAGTAGACAGTGA
CAAATTAAGATTGTAATTCCTAGAACAACTGCTAAAAACAAATACAAAAATGTACAACTA
AAAAGCCAATAGTGGATTTAAATGGAGTAAAAAAATACCAATTTAAGT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               2-167, gnl|bosTau2|chr1 (34119546-34119382)
               

               
               2-167, gnl|canFam2|chr33 (21880093-21880892)
               

               
               2-167, gnl|hg17|chr3 (115857279-115858074)
               

               
               2-167, gnl|Hg17|chr3 (115857870-115857701)
               

               
               2-167, gnl|loxAfr1|scaffold_231 (123995-124942)
               

               
               2-167, gnl|panTro1|chr2 (117565877-117566672)
               

               
               2-167, gnl|rheMac2|chr2 (34665193-34665990)
               

               
               2-167, gnl|xenTro1|scaffold_1807 (14274-13487)
               


               
               242-759, gnl|bosTau2|chr1 (34119107-34118577)
               

               
               242-759, gnl|Hg17|chr3 (115857642-115857117)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-167, gnl|bosTau2|chr1 (34119546-34119382)
               

               
               2-167, gnl|canFam2|chr33 (21880093-21880892)
               

               
               2-167, gnl|hg17|chr3 (115857279-115858074)
               

               
               2-167, gnl|Hg17|chr3 (115857870-115857701)
               

               
               2-167, gnl|loxAfr1|scaffold_231 (123995-124942)
               

               
               2-167, gnl|panTro1|chr2 (117565877-117566672)
               

               
               2-167, gnl|rheMac2|chr2 (34665193-34665990)
               

               
               2-167, gnl|xenTro1|scaffold_1807 (14274-13487)
               


               
               242-759, gnl|bosTau2|chr1 (34119107-34118577)
               

               
               242-759, gnl|Hg17|chr3 (115857642-115857117)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	2-167, gnl\|bosTau2\|chr1 (34119546-34119382)
	2-167, gnl\|canFam2\|chr33 (21880093-21880892)
	2-167, gnl\|hg17\|chr3 (115857279-115858074)
	2-167, gnl\|Hg17\|chr3 (115857870-115857701)
	2-167, gnl\|loxAfr1\|scaffold_231 (123995-124942)
	2-167, gnl\|panTro1\|chr2 (117565877-117566672)
	2-167, gnl\|rheMac2\|chr2 (34665193-34665990)
	2-167, gnl\|xenTro1\|scaffold_1807 (14274-13487)

	242-759, gnl\|bosTau2\|chr1 (34119107-34118577)
	242-759, gnl\|Hg17\|chr3 (115857642-115857117)