Ss1.1-OvF2-UMC-pd0fol-006-b08.3
|
AAAAATTTGGGTGAATGTTTGAAAATCATGAATCAGTCAGTCACCGTTATTAATTGAAGA
GCTGGGAAATACCTCGTTAATATATTTTTAAAACTGGTGTTGGACCCTCTGTGTATTTCA
GGTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGG
ACCTTCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGG
TCTCAGTATGCAAAGGTAAGCTCTTTTATTTTCTGATTAAAGAAAAAATTAAAAATCAAT
GAACACAACATGCATAAATGACAATCTCATATGATGTATTTGATCTCTTAGGTCTTATGT
CATCACGTAAGTTTTTATGATCTAAGTGTAAAATAGTCATTTTCAGTATTTGTTTTAATA
CCCTTGTAATTACTTTCTATTCAAGAGGGATATTTCACTTTTGCTGAGTGTGTGTACGTG
TAGAGAAACTTACGATGTAACATATATGTGAGTTACATACACGAATCTGTTTCAATAAAA
GAATTCAGTGGTGGGAAGTGTTCAACTAAGAAGATTTTAACATCAGGGCACTCTTTTAGG
CCAAAGTGCTGGAATTTCATAAGCAGCAAGGTGGTAACAGTGCTGATAGGATCCATTTGC
GTGTAGCTCTTACATAAGCTAAGGATCAAAGTGCCAATTTCTCAAGGAGAGCACCTTCTC
TGAGAAATGAATTATCTCTGATCTGTGTTGTATGCCCTAATACAACAGCAGCAAGAAGCC
ATAAAAAAAAAGCAATAGAAAATGAAAAAAAACCAAAATATTAAGGTAACTATGGAAAAA
TATATAATTGAGTTAACCTACGTATTTGCAGAACCAATTTTTGGCAAGACTCAGAATGGT
AGATGATACCCAGTCTGCAGAGACCAAATAGACAAGGCAACTCATCTGTCTTTTCTAGAT
TAGTTAGATGATTTATTTCCCACCAGATTCTACCATTGTAGAATTCATTTAAAAGGTAGG
AGGGTTAGGTCAAATATCCTAATAAGGATTTGCTTCATTTAGTGTATCCCATAAATGCAT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAAATTTGGGTGAATGTTTGAAAATCATGAATCAGTCAGTCACCGTTATTAATTGAAGA
GCTGGGAAATACCTCGTTAATATATTTTTAAAACTGGTGTTGGACCCTCTGTGTATTTCA
GGTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGG
ACCTTCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGG
TCTCAGTATGCAAAGGTAAGCTCTTTTATTTTCTGATTAAAGAAAAAATTAAAAATCAAT
GAACACAACATGCATAAATGACAATCTCATATGATGTATTTGATCTCTTAGGTCTTATGT
CATCACGTAAGTTTTTATGATCTAAGTGTAAAATAGTCATTTTCAGTATTTGTTTTAATA
CCCTTGTAATTACTTTCTATTCAAGAGGGATATTTCACTTTTGCTGAGTGTGTGTACGTG
TAGAGAAACTTACGATGTAACATATATGTGAGTTACATACACGAATCTGTTTCAATAAAA
GAATTCAGTGGTGGGAAGTGTTCAACTAAGAAGATTTTAACATCAGGGCACTCTTTTAGG
CCAAAGTGCTGGAATTTCATAAGCAGCAAGGTGGTAACAGTGCTGATAGGATCCATTTGC
GTGTAGCTCTTACATAAGCTAAGGATCAAAGTGCCAATTTCTCAAGGAGAGCACCTTCTC
TGAGAAATGAATTATCTCTGATCTGTGTTGTATGCCCTAATACAACAGCAGCAAGAAGCC
ATAAAAAAAAAGCAATAGAAAATGAAAAAAAACCAAAATATTAAGGTAACTATGGAAAAA
TATATAATTGAGTTAACCTACGTATTTGCAGAACCAATTTTTGGCAAGACTCAGAATGGT
AGATGATACCCAGTCTGCAGAGACCAAATAGACAAGGCAACTCATCTGTCTTTTCTAGAT
TAGTTAGATGATTTATTTCCCACCAGATTCTACCATTGTAGAATTCATTTAAAAGGTAGG
AGGGTTAGGTCAAATATCCTAATAAGGATTTGCTTCATTTAGTGTATCCCATAAATGCAT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
670-782, TCBAP2D1669 Pediatric pre-B cell acute lymphoblastic leukemia
(gb|BE244997.1|), blast E-value=1e-29, identity=91.15% |
|
670-782, 7f82h02.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE
(gb|BE858024.1|), blast E-value=1e-29, identity=91.15% |
|
670-782, 7i01c12.x1 NCI_CGAP_Co16 Homo sapiens cDNA clone IMAGE
(gb|BF594377.1|), blast E-value=1e-29, identity=91.15% |
|
670-782, TCBAP1D13552 Pediatric pre-B cell acute lymphoblastic leukemia
(gb|BM151113.1|), blast E-value=1e-29, identity=91.15% |
|
682-782, CH3#057_E06T7 Canine heart normalized cDNA Library in pBluescript
(gb|CF408908.1|), blast E-value=5e-32, identity=94.06% |
|
670-782, 17000599941063 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence
(gb|CN361020.1|), blast E-value=1e-29, identity=91.15% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
670-782, TCBAP2D1669 Pediatric pre-B cell acute lymphoblastic leukemia
(gb|BE244997.1|), blast E-value=1e-29, identity=91.15% |
|
670-782, 7f82h02.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE
(gb|BE858024.1|), blast E-value=1e-29, identity=91.15% |
|
670-782, 7i01c12.x1 NCI_CGAP_Co16 Homo sapiens cDNA clone IMAGE
(gb|BF594377.1|), blast E-value=1e-29, identity=91.15% |
|
670-782, TCBAP1D13552 Pediatric pre-B cell acute lymphoblastic leukemia
(gb|BM151113.1|), blast E-value=1e-29, identity=91.15% |
|
682-782, CH3#057_E06T7 Canine heart normalized cDNA Library in pBluescript
(gb|CF408908.1|), blast E-value=5e-32, identity=94.06% |
|
670-782, 17000599941063 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence
(gb|CN361020.1|), blast E-value=1e-29, identity=91.15% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
fco (0.471624) |
|
kid (0.129735) |
|
fco (0.471624) |
|
kid (0.129735) |