Non-Coding RNA Search

Ss1.1-OvF2-UMC-pd0fol-006-b08.3

Sequence:


               
               AAAAATTTGGGTGAATGTTTGAAAATCATGAATCAGTCAGTCACCGTTATTAATTGAAGA
GCTGGGAAATACCTCGTTAATATATTTTTAAAACTGGTGTTGGACCCTCTGTGTATTTCA
GGTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGG
ACCTTCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGG
TCTCAGTATGCAAAGGTAAGCTCTTTTATTTTCTGATTAAAGAAAAAATTAAAAATCAAT
GAACACAACATGCATAAATGACAATCTCATATGATGTATTTGATCTCTTAGGTCTTATGT
CATCACGTAAGTTTTTATGATCTAAGTGTAAAATAGTCATTTTCAGTATTTGTTTTAATA
CCCTTGTAATTACTTTCTATTCAAGAGGGATATTTCACTTTTGCTGAGTGTGTGTACGTG
TAGAGAAACTTACGATGTAACATATATGTGAGTTACATACACGAATCTGTTTCAATAAAA
GAATTCAGTGGTGGGAAGTGTTCAACTAAGAAGATTTTAACATCAGGGCACTCTTTTAGG
CCAAAGTGCTGGAATTTCATAAGCAGCAAGGTGGTAACAGTGCTGATAGGATCCATTTGC
GTGTAGCTCTTACATAAGCTAAGGATCAAAGTGCCAATTTCTCAAGGAGAGCACCTTCTC
TGAGAAATGAATTATCTCTGATCTGTGTTGTATGCCCTAATACAACAGCAGCAAGAAGCC
ATAAAAAAAAAGCAATAGAAAATGAAAAAAAACCAAAATATTAAGGTAACTATGGAAAAA
TATATAATTGAGTTAACCTACGTATTTGCAGAACCAATTTTTGGCAAGACTCAGAATGGT
AGATGATACCCAGTCTGCAGAGACCAAATAGACAAGGCAACTCATCTGTCTTTTCTAGAT
TAGTTAGATGATTTATTTCCCACCAGATTCTACCATTGTAGAATTCATTTAAAAGGTAGG
AGGGTTAGGTCAAATATCCTAATAAGGATTTGCTTCATTTAGTGTATCCCATAAATGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATTTGGGTGAATGTTTGAAAATCATGAATCAGTCAGTCACCGTTATTAATTGAAGA
GCTGGGAAATACCTCGTTAATATATTTTTAAAACTGGTGTTGGACCCTCTGTGTATTTCA
GGTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGG
ACCTTCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGG
TCTCAGTATGCAAAGGTAAGCTCTTTTATTTTCTGATTAAAGAAAAAATTAAAAATCAAT
GAACACAACATGCATAAATGACAATCTCATATGATGTATTTGATCTCTTAGGTCTTATGT
CATCACGTAAGTTTTTATGATCTAAGTGTAAAATAGTCATTTTCAGTATTTGTTTTAATA
CCCTTGTAATTACTTTCTATTCAAGAGGGATATTTCACTTTTGCTGAGTGTGTGTACGTG
TAGAGAAACTTACGATGTAACATATATGTGAGTTACATACACGAATCTGTTTCAATAAAA
GAATTCAGTGGTGGGAAGTGTTCAACTAAGAAGATTTTAACATCAGGGCACTCTTTTAGG
CCAAAGTGCTGGAATTTCATAAGCAGCAAGGTGGTAACAGTGCTGATAGGATCCATTTGC
GTGTAGCTCTTACATAAGCTAAGGATCAAAGTGCCAATTTCTCAAGGAGAGCACCTTCTC
TGAGAAATGAATTATCTCTGATCTGTGTTGTATGCCCTAATACAACAGCAGCAAGAAGCC
ATAAAAAAAAAGCAATAGAAAATGAAAAAAAACCAAAATATTAAGGTAACTATGGAAAAA
TATATAATTGAGTTAACCTACGTATTTGCAGAACCAATTTTTGGCAAGACTCAGAATGGT
AGATGATACCCAGTCTGCAGAGACCAAATAGACAAGGCAACTCATCTGTCTTTTCTAGAT
TAGTTAGATGATTTATTTCCCACCAGATTCTACCATTGTAGAATTCATTTAAAAGGTAGG
AGGGTTAGGTCAAATATCCTAATAAGGATTTGCTTCATTTAGTGTATCCCATAAATGCAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               258-369, - strand, RNAz p=0.650953
               

               
               666-813, - strand, RNAz p=0.999896

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-369, - strand, RNAz p=0.650953
               

               
               666-813, - strand, RNAz p=0.999896

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               670-782, TCBAP2D1669 Pediatric pre-B cell acute lymphoblastic leukemia 
(gb|BE244997.1|), blast E-value=1e-29, identity=91.15% 
               

               
               670-782, 7f82h02.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|BE858024.1|), blast E-value=1e-29, identity=91.15% 
               

               
               670-782, 7i01c12.x1 NCI_CGAP_Co16 Homo sapiens cDNA clone IMAGE 
(gb|BF594377.1|), blast E-value=1e-29, identity=91.15% 
               

               
               670-782, TCBAP1D13552 Pediatric pre-B cell acute lymphoblastic leukemia 
(gb|BM151113.1|), blast E-value=1e-29, identity=91.15% 
               

               
               682-782, CH3#057_E06T7 Canine heart normalized cDNA Library in pBluescript 
(gb|CF408908.1|), blast E-value=5e-32, identity=94.06% 
               

               
               670-782, 17000599941063 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN361020.1|), blast E-value=1e-29, identity=91.15%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               670-782, TCBAP2D1669 Pediatric pre-B cell acute lymphoblastic leukemia 
(gb|BE244997.1|), blast E-value=1e-29, identity=91.15% 
               

               
               670-782, 7f82h02.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|BE858024.1|), blast E-value=1e-29, identity=91.15% 
               

               
               670-782, 7i01c12.x1 NCI_CGAP_Co16 Homo sapiens cDNA clone IMAGE 
(gb|BF594377.1|), blast E-value=1e-29, identity=91.15% 
               

               
               670-782, TCBAP1D13552 Pediatric pre-B cell acute lymphoblastic leukemia 
(gb|BM151113.1|), blast E-value=1e-29, identity=91.15% 
               

               
               682-782, CH3#057_E06T7 Canine heart normalized cDNA Library in pBluescript 
(gb|CF408908.1|), blast E-value=5e-32, identity=94.06% 
               

               
               670-782, 17000599941063 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN361020.1|), blast E-value=1e-29, identity=91.15%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1080, gnl|bosTau2|chr11 (75677159-75676105)
               

               
               4-1080, gnl|Hg17|chr9 (122964273-122963173)
               

               
               4-1080, gnl|Mm7|chr2 (37588257-37587201)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1080, gnl|bosTau2|chr11 (75677159-75676105)
               

               
               4-1080, gnl|Hg17|chr9 (122964273-122963173)
               

               
               4-1080, gnl|Mm7|chr2 (37588257-37587201)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fco (0.471624)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               kid (0.129735)

	258-369, - strand, RNAz p=0.650953
	666-813, - strand, RNAz p=0.999896

	670-782, TCBAP2D1669 Pediatric pre-B cell acute lymphoblastic leukemia (gb\|BE244997.1\|), blast E-value=1e-29, identity=91.15%
	670-782, 7f82h02.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE (gb\|BE858024.1\|), blast E-value=1e-29, identity=91.15%
	670-782, 7i01c12.x1 NCI_CGAP_Co16 Homo sapiens cDNA clone IMAGE (gb\|BF594377.1\|), blast E-value=1e-29, identity=91.15%
	670-782, TCBAP1D13552 Pediatric pre-B cell acute lymphoblastic leukemia (gb\|BM151113.1\|), blast E-value=1e-29, identity=91.15%
	682-782, CH3#057_E06T7 Canine heart normalized cDNA Library in pBluescript (gb\|CF408908.1\|), blast E-value=5e-32, identity=94.06%
	670-782, 17000599941063 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN361020.1\|), blast E-value=1e-29, identity=91.15%

	4-1080, gnl\|bosTau2\|chr11 (75677159-75676105)
	4-1080, gnl\|Hg17\|chr9 (122964273-122963173)
	4-1080, gnl\|Mm7\|chr2 (37588257-37587201)